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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

The structural basis for RNA specificity and Ca2 inhibition of an RNA-dependent RNA polymerase phi6p2 with 5NT RNA conformation A

Results of the assignment of 12 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011uvm_D_U3_U4NANNANT01.20AB02
021uvm_D_U4_U5NANNANT00.95AB02
031uvm_D_U5_C6NANNANT02.43OP04
041uvm_D_C6_C7AAAAA04550.38AA04
051uvm_E_U3_U4NANNANT01.96OP1S
061uvm_E_U4_U5NANNANT00.95AB02
071uvm_E_U5_C6NANNANT02.44OP04
081uvm_E_C6_C7AAAAA04530.37AA04
091uvm_F_U3_U4NANNANT01.95OP1S
101uvm_F_U4_U5NANNANT00.93AB02
111uvm_F_U5_C6NANNANT01.80OP01
121uvm_F_C6_C7AAAAA04550.37AA04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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