Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of the methylated N-ADA/DNA complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 30 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1u8b_B_DA201_DA202 | BBB | BB00 | 93 | 0.16 |
| 02 | 1u8b_B_DA202_DA203 | BBB | BB00 | 88 | 0.28 |
| 03 | 1u8b_B_DA203_DT204 | BBB | BB01 | 79 | 0.24 |
| 04 | 1u8b_B_DT204_DT205 | BBB | BB00 | 38 | 0.40 |
| 05 | 1u8b_C_DA301_DA302 | BBB | BB00 | 95 | 0.16 |
| 06 | 1u8b_C_DA302_DT303 | BBB | BB00 | 81 | 0.33 |
| 07 | 1u8b_C_DT303_DT304 | BBB | BB00 | 90 | 0.20 |
| 08 | 1u8b_C_DT304_DT305 | B-A | BA08 | 59 | 0.30 |
| 09 | 1u8b_D_DA401_DA402 | BBB | BB00 | 92 | 0.14 |
| 10 | 1u8b_D_DA402_DA403 | BBB | BB00 | 81 | 0.28 |
| 11 | 1u8b_D_DA403_DG404 | BBw | BB02 | 83 | 0.17 |
| 12 | 1u8b_D_DG404_DC405 | BBB | BB00 | 64 | 0.24 |
| 13 | 1u8b_D_DC405_DG406 | B12 | BB04 | 94 | 0.14 |
| 14 | 1u8b_D_DG406_DC407 | BBB | BB00 | 89 | 0.15 |
| 15 | 1u8b_D_DC407_DA408 | B12 | BB04 | 78 | 0.21 |
| 16 | 1u8b_D_DA408_DA409 | BBB | BB00 | 84 | 0.18 |
| 17 | 1u8b_D_DA409_DG410 | BBB | BB00 | 93 | 0.20 |
| 18 | 1u8b_D_DG410_DA411 | BBB | BB00 | 88 | 0.21 |
| 19 | 1u8b_D_DA411_DT412 | BBB | BB00 | 94 | 0.19 |
| 20 | 1u8b_E_DA501_DT502 | BBB | BB00 | 88 | 0.17 |
| 21 | 1u8b_E_DT502_DC503 | BBB | BB00 | 63 | 0.26 |
| 22 | 1u8b_E_DC503_DT504 | BBB | BB00 | 77 | 0.28 |
| 23 | 1u8b_E_DT504_DT505 | BBB | BB00 | 91 | 0.15 |
| 24 | 1u8b_E_DT505_DG506 | BBB | BB00 | 85 | 0.20 |
| 25 | 1u8b_E_DG506_DC507 | BBw | BB02 | 74 | 0.19 |
| 26 | 1u8b_E_DC507_DG508 | BBB | BB00 | 65 | 0.30 |
| 27 | 1u8b_E_DG508_DC509 | BBB | BB00 | 96 | 0.14 |
| 28 | 1u8b_E_DC509_DT510 | BBB | BB00 | 83 | 0.26 |
| 29 | 1u8b_E_DT510_DT511 | BBB | BB00 | 84 | 0.17 |
| 30 | 1u8b_E_DT511_DT512 | BBw | BB02 | 25 | 0.28 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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