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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

COMPLEX BETWEEN DNA AND THE DNA PHOTOLYASE FROM ANACYSTIS NIDULANS

Results of the assignment of 42 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011tez_I_DA1_DT2B12BB04560.34BB04
021tez_I_DT2_DC3BBBBB00850.28BB00
031tez_I_DC3_DG4BB2BB07850.29BB07
041tez_I_DG4_DG5BBBBB00880.18BB00
051tez_I_DG5_DC6BBBBB00770.27BB00
061tez_I_DC6_DT7NANNANT01.12OP13
071tez_J_DC6_DG7NANNANT01.02OP22
081tez_J_DG7_DA8NANNANT00.71AB02
091tez_J_DA8_DA9NANNANT01.19IC06
101tez_J_DA9_DG10NANNANT00.31BB12
111tez_J_DG10_DC11BBBBB00940.18BB00
121tez_J_DC11_DC12BB2BB07780.27BB07
131tez_J_DC12_DG13BBBBB00740.38BB00
141tez_J_DG13_DA14BBBBB00620.38BB00
151tez_K_DA1_DT2B12BB04560.34BB04
161tez_K_DT2_DC3BBBBB00850.28BB00
171tez_K_DC3_DG4BB2BB07850.30BB07
181tez_K_DG4_DG5BBBBB00860.18BB00
191tez_K_DG5_DC6BBBBB00780.27BB00
201tez_K_DC6_DT7NANNANT01.11OP13
211tez_L_DC6_DG7NANNANT01.05OP22
221tez_L_DG7_DA8NANNANT00.70AB02
231tez_L_DA8_DA9NANNANT01.19IC06
241tez_L_DA9_DG10NANNANT00.31BB12
251tez_L_DG10_DC11BBBBB00930.20BB00
261tez_L_DC11_DC12BB2BB07760.28BB07
271tez_L_DC12_DG13BBBBB00730.38BB00
281tez_L_DG13_DA14B12BB04840.16BB04
291tez_M_DT8_DC9B12BB04760.28BB04
301tez_M_DC9_DG10B12BB04740.23BB04
311tez_M_DG10_DC11BBBBB00880.25BB00
321tez_N_DG10_DC11BBBBB00930.17BB00
331tez_N_DC11_DC12BB2BB07720.27BB07
341tez_N_DC12_DG13BBBBB00730.37BB00
351tez_N_DG13_DA14B12BB04900.17BB04
361tez_O_DT8_DC9B12BB04790.29BB04
371tez_O_DC9_DG10B12BB04730.21BB04
381tez_O_DG10_DC11BBBBB00830.29BB00
391tez_P_DG10_DC11BBBBB00940.16BB00
401tez_P_DC11_DC12BB2BB07710.26BB07
411tez_P_DC12_DG13BBBBB00690.39BB00
421tez_P_DG13_DA14B12BB04820.18BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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