DNATCO v3.2: results

Results of the assignment of 46 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.

step number	Step name	CANA	NtC	confal	rmsd
01	1t9i_C_DG501_DC502	B12	BB04	30	0.37	BB04
02	1t9i_C_DC502_DA503	BBB	BB00	61	0.42	BB00
03	1t9i_C_DA503_DA504	B-A	BA05	87	0.18	BA05
04	1t9i_C_DA504_DA505	BBB	BB01	54	0.38	BB01
05	1t9i_C_DA505_DA506	BBB	BB01	95	0.12	BB01
06	1t9i_C_DA506_DC507	BBB	BB01	87	0.16	BB01
07	1t9i_C_DC507_DG508	BBB	BB00	79	0.26	BB00
08	1t9i_C_DG508_DT509	BBB	BB00	61	0.37	BB00
09	1t9i_C_DT509_DC510	B12	BB04	72	0.29	BB04
10	1t9i_C_DC510_DG511	BBB	BB00	92	0.20	BB00
11	1t9i_C_DG511_DT512	miB	BB12	63	0.39	BB12
12	1t9i_C_DT512_DG513	BBw	BB16	33	0.39	BB16
13	1t9i_C_DG513_DA514	miB	BB12	72	0.25	BB12
14	1t9i_C_DA514_DG515	BBw	BB16	70	0.45	BB16
15	1t9i_C_DG515_DA516	BBB	BB00	60	0.23	BB00
16	1t9i_C_DA516_DC517	B-A	BA09	86	0.18	BA09
17	1t9i_C_DC517_DA518	A-B	AB01	16	0.43	AB01
18	1t9i_C_DA518_DG519	BBB	BB00	54	0.26	BB00
19	1t9i_C_DG519_DT520	BBB	BB00	85	0.21	BB00
20	1t9i_C_DT520_DT521	BBB	BB00	82	0.26	BB00
21	1t9i_C_DT521_DT522	BBB	BB00	86	0.22	BB00
22	1t9i_C_DT522_DC523	BBB	BB00	68	0.36	BB00
23	1t9i_C_DC523_DG524	BB2	BB07	77	0.30	BB07
24	1t9i_D_DC551_DG552	BBB	BB00	52	0.46	BB00
25	1t9i_D_DG552_DA553	B12	BB04	69	0.35	BB04
26	1t9i_D_DA553_DA554	B-A	BA05	85	0.18	BA05
27	1t9i_D_DA554_DA555	BBB	BB00	33	0.34	BB00
28	1t9i_D_DA555_DC556	BBB	BB00	93	0.11	BB00
29	1t9i_D_DC556_DT557	BBB	BB00	81	0.25	BB00
30	1t9i_D_DT557_DG558	BBB	BB00	83	0.26	BB00
31	1t9i_D_DG558_DT559	BBB	BB00	85	0.25	BB00
32	1t9i_D_DT559_DC560	BB2	BB07	88	0.18	BB07
33	1t9i_D_DC560_DT561	BBB	BB00	90	0.22	BB00
34	1t9i_D_DT561_DC562	miB	BB12	92	0.22	BB12
35	1t9i_D_DC562_DA563	BBw	BB16	30	0.37	BB16
36	1t9i_D_DA563_DC564	miB	BB12	57	0.33	BB12
37	1t9i_D_DC564_DG565	BBw	BB16	75	0.42	BB16
38	1t9i_D_DG565_DA566	BBB	BB00	70	0.22	BB00
39	1t9i_D_DA566_DC567	B-A	BA09	86	0.15	BA09
40	1t9i_D_DC567_DG568	A-B	AB04	40	0.33	AB04
41	1t9i_D_DG568_DT569	BBw	BB16	39	0.73	BB16
42	1t9i_D_DT569_DT570	BBB	BB00	81	0.22	BB00
43	1t9i_D_DT570_DT571	BBB	BB00	85	0.22	BB00
44	1t9i_D_DT571_DT572	BBB	BB00	90	0.22	BB00
45	1t9i_D_DT572_DG573	BBB	BB00	87	0.26	BB00
46	1t9i_D_DG573_DC574	BB2	BB07	88	0.21	BB07

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

δ1

ε1

ζ1

α2

β2

γ2

δ2

χ1

χ2

μ

NN

CC

step_torsions

ntC_average

Δ torsions

torsion scores

comments step confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

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A

A-B

B-A

IC

OPN

Z

N

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