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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

I-CreI(D20N)/DNA complex

Results of the assignment of 46 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011t9i_C_DG501_DC502B12BB04300.37BB04
021t9i_C_DC502_DA503BBBBB00610.42BB00
031t9i_C_DA503_DA504B-ABA05870.18BA05
041t9i_C_DA504_DA505BBBBB01540.38BB01
051t9i_C_DA505_DA506BBBBB01950.12BB01
061t9i_C_DA506_DC507BBBBB01870.16BB01
071t9i_C_DC507_DG508BBBBB00790.26BB00
081t9i_C_DG508_DT509BBBBB00610.37BB00
091t9i_C_DT509_DC510B12BB04720.29BB04
101t9i_C_DC510_DG511BBBBB00920.20BB00
111t9i_C_DG511_DT512miBBB12630.39BB12
121t9i_C_DT512_DG513BBwBB16330.39BB16
131t9i_C_DG513_DA514miBBB12720.25BB12
141t9i_C_DA514_DG515BBwBB16700.45BB16
151t9i_C_DG515_DA516BBBBB00600.23BB00
161t9i_C_DA516_DC517B-ABA09860.18BA09
171t9i_C_DC517_DA518A-BAB01160.43AB01
181t9i_C_DA518_DG519BBBBB00540.26BB00
191t9i_C_DG519_DT520BBBBB00850.21BB00
201t9i_C_DT520_DT521BBBBB00820.26BB00
211t9i_C_DT521_DT522BBBBB00860.22BB00
221t9i_C_DT522_DC523BBBBB00680.36BB00
231t9i_C_DC523_DG524BB2BB07770.30BB07
241t9i_D_DC551_DG552BBBBB00520.46BB00
251t9i_D_DG552_DA553B12BB04690.35BB04
261t9i_D_DA553_DA554B-ABA05850.18BA05
271t9i_D_DA554_DA555BBBBB00330.34BB00
281t9i_D_DA555_DC556BBBBB00930.11BB00
291t9i_D_DC556_DT557BBBBB00810.25BB00
301t9i_D_DT557_DG558BBBBB00830.26BB00
311t9i_D_DG558_DT559BBBBB00850.25BB00
321t9i_D_DT559_DC560BB2BB07880.18BB07
331t9i_D_DC560_DT561BBBBB00900.22BB00
341t9i_D_DT561_DC562miBBB12920.22BB12
351t9i_D_DC562_DA563BBwBB16300.37BB16
361t9i_D_DA563_DC564miBBB12570.33BB12
371t9i_D_DC564_DG565BBwBB16750.42BB16
381t9i_D_DG565_DA566BBBBB00700.22BB00
391t9i_D_DA566_DC567B-ABA09860.15BA09
401t9i_D_DC567_DG568A-BAB04400.33AB04
411t9i_D_DG568_DT569BBwBB16390.73BB16
421t9i_D_DT569_DT570BBBBB00810.22BB00
431t9i_D_DT570_DT571BBBBB00850.22BB00
441t9i_D_DT571_DT572BBBBB00900.22BB00
451t9i_D_DT572_DG573BBBBB00870.26BB00
461t9i_D_DG573_DC574BB2BB07880.21BB07

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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