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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Joint X-ray and NMR Refinement of Yeast L30e-mRNA complex

Results of the assignment of 25 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011t0k_C_G6_A7AAAAA00640.21AA00
021t0k_C_A7_C8AAAAA00670.21AA00
031t0k_C_C8_C9AAAAA00520.28AA00
041t0k_C_C9_G10AAAAA04640.41AA04
051t0k_C_G10_G11NANNANT00.55AA11
061t0k_C_G11_A12NANNANT00.62BB08
071t0k_C_A12_G13NANNANT00.67OP24
081t0k_C_G13_U14AAAAA08230.41AA08
091t0k_C_U14_G15NANNANT00.56AA11
101t0k_C_G15_U16NANNANT00.50AA06
111t0k_C_U16_C17NANNANT00.34AB04
121t0k_D_G50_A51AAwAA01100.38AA01
131t0k_D_A51_C52NANNANT00.81BA16
141t0k_D_C52_G53NANNANT00.55AA01
151t0k_D_G53_C54NANNANT00.44AA06
161t0k_D_C54_A55NANNANT00.51AA05
171t0k_D_A55_G56NANNANT01.25BB2S
181t0k_D_G56_A57NANNANT01.66OP18
191t0k_D_A57_G58NANNANT00.91OP19
201t0k_D_G58_A59NANNANT00.57OP15
211t0k_D_A59_U60AAwAA11400.26AA11
221t0k_D_U60_G61NANNANT00.90AA08
231t0k_D_G61_G62NANNANT00.38AA06
241t0k_D_G62_U63NANNANT00.38AA03
251t0k_D_U63_C64AAwAA01330.24AA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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