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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

HIV-1 reverse transcriptase crosslinked to tenofovir terminated template-primer (complex P)

Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011t03_T_DG703_DC704NANNANT00.55OP22
021t03_T_DC704_DA705NANNANT01.29IC03
031t03_T_DA705_DT706NANNANT00.59AB1S
041t03_T_DT706_DG707NANNANT00.42AA08
051t03_T_DG707_DG708AAAAA00410.23AA00
061t03_T_DG708_DC709AAAAA00330.20AA00
071t03_T_DC709_DG710AAAAA00300.26AA00
081t03_T_DG710_DC711AAAAA00130.27AA00
091t03_T_DC711_DC712AAAAA02600.30AA02
101t03_T_DC712_DC713AAAAA00160.30AA00
111t03_T_DC713_DG714A-BAB01320.28AB01
121t03_T_DG714_DA715BBBBB00790.28BB00
131t03_T_DA715_DA716B12BB04750.20BB04
141t03_T_DA716_DC717BBBBB00670.28BB00
151t03_T_DC717_DA718BBBBB00750.29BB00
161t03_T_DA718_DG719BBBBB00890.15BB00
171t03_T_DG719_DG720BBBBB00760.30BB00
181t03_T_DG720_DG721BBBBB00730.16BB00
191t03_T_DG721_DA722BBBBB00750.26BB00
201t03_T_DA722_DC723BBBBB00680.32BB00
211t03_T_DC723_DT724BBBBB00610.29BB00
221t03_T_DT724_DG725BBBBB00550.39BB00
231t03_P_DC803_DA804BBBBB00680.38BB00
241t03_P_DA804_DG805BBBBB00730.16BB00
251t03_P_DG805_DT806BBwBB02830.18BB02
261t03_P_DT806_DC807BBBBB00770.20BB00
271t03_P_DC807_DC808BBwBB02680.31BB02
281t03_P_DC808_DC809BBBBB00540.28BB00
291t03_P_DC809_DT810B12BB04720.21BB04
301t03_P_DT810_DG811BBBBB00800.20BB00
311t03_P_DG811_DT812BBBBB00880.17BB00
321t03_P_DT812_DT813BBBBB00890.15BB00
331t03_P_DT813_DC814BBBBB00890.11BB00
341t03_P_DC814_DG815B-ABA08840.19BA08
351t03_P_DG815_DG816AAAAA00210.32AA00
361t03_P_DG816_MRG817AAAAA00180.30AA00
371t03_P_MRG817_DC818AAAAA00230.25AA00
381t03_P_DC818_DG819AAAAA00380.18AA00
391t03_P_DG819_DC820AAAAA00500.21AA00
401t03_P_DC820_DC.A821NANNANT00.53AB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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