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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Snapshots of replication through an abasic lesion: structural basis for base substitution and frameshift

Results of the assignment of 52 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011s0o_C_DG1801_DG1802BBBBB00890.18BB00
021s0o_C_DG1802_DG1803B12BB04830.22BB04
031s0o_C_DG1803_DG1804BBBBB00780.32BB00
041s0o_C_DG1804_DG1805BBBBB00800.24BB00
051s0o_C_DG1805_DA1806B12BB04780.17BB04
061s0o_C_DA1806_DA1807BBBBB00890.19BB00
071s0o_C_DA1807_DG1808B12BB04870.25BB04
081s0o_C_DG1808_DG1809BBBBB00650.23BB00
091s0o_C_DG1809_DA1810BBBBB00740.32BB00
101s0o_C_DA1810_DC1811BBBBB00790.22BB00
111s0o_C_DC1811_DT1812BBBBB00860.19BB00
121s0o_C_DT1812_DC1813BBBBB00890.17BB00
131s0o_D_DT1902_DC1903NANNANT00.84OP21
141s0o_D_DC1903_DA1904NANNANT01.51IC03
151s0o_D_DA1904_DG1905BBBBB00730.34BB00
161s0o_D_DA1907_DG1908BBBBB00750.18BB00
171s0o_D_DG1908_DT1909miBBB12280.53BB12
181s0o_D_DT1909_DC1910NANNANT00.40BB03
191s0o_D_DC1910_DC1911BBBBB00740.28BB00
201s0o_D_DC1911_DT1912BBBBB00700.15BB00
211s0o_D_DT1912_DT1913BBBBB00550.30BB00
221s0o_D_DT1913_DC1914NANNANT00.42BB10
231s0o_D_DC1914_DC1915NANNANT00.65AB02
241s0o_D_DC1915_DC1916B12BB04670.31BB04
251s0o_D_DC1916_DC1917BBBBB00800.31BB00
261s0o_D_DC1917_DC1918B12BB04700.26BB04
271s0o_E_DG1801_DG1802BBBBB00880.23BB00
281s0o_E_DG1802_DG1803BB2BB07650.33BB07
291s0o_E_DG1803_DG1804BBBBB00900.24BB00
301s0o_E_DG1804_DG1805B12BB04920.14BB04
311s0o_E_DG1805_DA1806BBBBB00670.34BB00
321s0o_E_DA1806_DA1807BBBBB00910.14BB00
331s0o_E_DA1807_DG1808B12BB04890.16BB04
341s0o_E_DG1808_DG1809BBBBB00910.17BB00
351s0o_E_DG1809_DA1810BBBBB00930.16BB00
361s0o_E_DA1810_DC1811BBBBB00600.23BB00
371s0o_E_DC1811_DT1812miBBB12400.51BB12
381s0o_E_DT1812_DC1813NANNANT00.76BB13
391s0o_F_DT1902_DC1903NANNANT00.65BB1S
401s0o_F_DC1903_DA1904NANNANT01.28AA13
411s0o_F_DA1904_DG1905BBBBB00550.50BB00
421s0o_F_DA1907_DG1908BB2BB07390.43BB07
431s0o_F_DG1908_DT1909BBBBB00440.46BB00
441s0o_F_DT1909_DC1910BBBBB00970.10BB00
451s0o_F_DC1910_DC1911BBBBB00860.18BB00
461s0o_F_DC1911_DT1912BBBBB00880.19BB00
471s0o_F_DT1912_DT1913BBBBB00950.08BB00
481s0o_F_DT1913_DC1914BBBBB00930.13BB00
491s0o_F_DC1914_DC1915BBBBB00910.14BB00
501s0o_F_DC1915_DC1916BBBBB00730.34BB00
511s0o_F_DC1916_DC1917BBBBB00730.30BB00
521s0o_F_DC1917_DC1918B12BB04600.20BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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