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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Snapshots of replication through an abasic lesion: structural basis for base substitution and frameshift

Results of the assignment of 27 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011s0n_P_DG1_DG2BBBBB00930.17BB00
021s0n_P_DG2_DC3B12BB04720.31BB04
031s0n_P_DC3_DA4BBBBB00840.21BB00
041s0n_P_DA4_DC5BBwBB11870.17BB11
051s0n_P_DC5_DT6BBwBB16620.59BB16
061s0n_P_DT6_DG7B12BB04570.29BB04
071s0n_P_DG7_DA8BBBBB00830.27BB00
081s0n_P_DA8_DT9BBBBB00860.22BB00
091s0n_P_DT9_DC10BBwBB02710.20BB02
101s0n_P_DC10_DA11BBBBB00800.16BB00
111s0n_P_DA11_DC12BBBBB00710.19BB00
121s0n_P_DC12_DG13B12BB04440.22BB04
131s0n_T_DT1_DA2NANNANT02.42OP14
141s0n_T_DA2_DC3NANNANT00.99OP06
151s0n_T_DC3_DG4NANNANT00.59OP26
161s0n_T_DC6_DG7NANNANT00.54BB00
171s0n_T_DG7_DT8BBBBB00690.31BB00
181s0n_T_DT8_DG9B12BB04570.21BB04
191s0n_T_DG9_DA10BBBBB00880.21BB00
201s0n_T_DA10_DT11BBBBB00860.18BB00
211s0n_T_DT11_DC12BBBBB00850.15BB00
221s0n_T_DC12_DA13B12BB04700.30BB04
231s0n_T_DA13_DG14BBBBB00790.22BB00
241s0n_T_DG14_DT15BBBBB00240.42BB00
251s0n_T_DT15_DG16NANNANT00.33AB02
261s0n_T_DG16_DC17BBBBB00480.38BB00
271s0n_T_DC17_DC18B12BB04700.31BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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