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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

THE PHAGE 434 OR2/R1-69 COMPLEX AT 2.5 ANGSTROMS RESOLUTION

Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011rpe_B_DT1_DA2BBwBB16170.37BB16
021rpe_B_DA2_DT3BBBBB00560.31BB00
031rpe_B_DT3_DA4B-ABA05450.38BA05
041rpe_B_DA4_DC5miBBB10420.34BB10
051rpe_B_DC5_DA6BBBBB00400.27BB00
061rpe_B_DA6_DA7BBBBB00730.30BB00
071rpe_B_DA7_DT8BBBBB00310.30BB00
081rpe_B_DT8_DG9BBBBB00540.32BB00
091rpe_B_DG9_DT10BBBBB00290.26BB00
101rpe_B_DT10_DA11BBBBB00650.37BB00
111rpe_B_DA11_DT12BBBBB00800.28BB00
121rpe_B_DT12_DC13miBBB15230.34BB15
131rpe_B_DC13_DT14B-ABA08500.56BA08
141rpe_B_DT14_DT15A-BAB03450.26AB03
151rpe_B_DT15_DG16NANNANT00.28BB15
161rpe_B_DG16_DT17BBBBB00740.30BB00
171rpe_B_DT17_DT18BBBBB00410.31BB00
181rpe_B_DT18_DT19B12BB04100.35BB04
191rpe_B_DT19_DG20NANNANT00.45BB17
201rpe_A_DA21_DC22NANNANT00.61BB11
211rpe_A_DC22_DA23BBBBB00400.34BB00
221rpe_A_DA23_DA24BBBBB00380.28BB00
231rpe_A_DA24_DA25NANNANT00.31BB00
241rpe_A_DA25_DC26BBBBB00640.36BB00
251rpe_A_DC26_DA27NANNANT00.37BB10
261rpe_A_DA27_DA28B12BB04480.24BB04
271rpe_A_DA28_DG29B12BB04360.35BB04
281rpe_A_DG29_DA30BBBBB00430.37BB00
291rpe_A_DA30_DT31BBBBB00500.30BB00
301rpe_A_DT31_DA32B12BB04460.23BB04
311rpe_A_DA32_DC33B-ABA08610.52BA08
321rpe_A_DC33_DA34BBBBB00110.28BB00
331rpe_A_DA34_DT35miBBB15440.26BB15
341rpe_A_DT35_DT36BBBBB00120.30BB00
351rpe_A_DT36_DG37BBBBB01810.21BB01
361rpe_A_DG37_DT38BBBBB01740.23BB01
371rpe_A_DT38_DA39BBBBB00510.26BB00
381rpe_A_DA39_DT40NANNANT00.43BA13

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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