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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

PURINE REPRESSOR-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX

Results of the assignment of 16 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011qp4_M_DT699_DA700NANNANT00.75BA08
021qp4_M_DA700_DC701NANNANT00.55BB03
031qp4_M_DC701_DG702A-BAB03600.32AB03
041qp4_M_DG702_DC703miBBB15230.39BB15
051qp4_M_DC703_DA704BBBBB00140.36BB00
061qp4_M_DA704_DA705BBBBB00160.43BB00
071qp4_M_DA705_DT706BBBBB00350.27BB00
081qp4_M_DT706_DC707B-ABA08550.28BA08
091qp4_M_DC707_DG708NANNANT00.78BB02
101qp4_M_DG708_DA709NANNANT00.50BB12
111qp4_M_DA709_DT710A-BAB04270.28AB04
121qp4_M_DT710_DT711BBBBB00360.28BB00
131qp4_M_DT711_DG712BB2BB07740.26BB07
141qp4_M_DG712_DC713NANNANT00.33BB02
151qp4_M_DC713_DG714BBwBB02490.32BB02
161qp4_M_DG714_DT715BBBBB00150.37BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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