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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

PURINE REPRESSOR-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX

Results of the assignment of 16 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011qp0_M_DT699_DA700NANNANT00.74BB16
021qp0_M_DA700_DC701NANNANT00.64AA04
031qp0_M_DC701_DG702A-BAB05250.38AB05
041qp0_M_DG702_DC703miBBB15310.32BB15
051qp0_M_DC703_DA704NANNANT00.52BB15
061qp0_M_DA704_DA705BB2BB07110.23BB07
071qp0_M_DA705_DC706BBBBB00640.22BB00
081qp0_M_DC706_DC707B-ABA08340.33BA08
091qp0_M_DC707_DG708NANNANT00.60AB03
101qp0_M_DG708_DG709B-ABA13650.35BA13
111qp0_M_DG709_DT710A-BAB05210.29AB05
121qp0_M_DT710_DT711B12BB04360.44BB04
131qp0_M_DT711_DG712BB2BB07600.25BB07
141qp0_M_DG712_DC713NANNANT00.45BB05
151qp0_M_DC713_DG714NANNANT00.36BB02
161qp0_M_DG714_DT715NANNANT00.30BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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