DNATCO v3.2: results

Crystal structure of the G(-26) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution.

Results of the assignment of 51 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.

step number	Step name	CANA	NtC	confal	rmsd
01	1qn5_C_DC202_DT203	AAA	AA04	46	0.33	AA04
02	1qn5_C_DT203_DA204	A-B	AB04	61	0.17	AB04
03	1qn5_C_DA204_DT205	NAN	NANT	0	0.58	BA08
04	1qn5_C_DT205_DA206	AAA	AA02	85	0.20	AA02
05	1qn5_C_DA206_DA207	AAA	AA02	85	0.29	AA02
06	1qn5_C_DA207_DG208	AAA	AA02	84	0.23	AA02
07	1qn5_C_DG208_DA209	AAA	AA02	70	0.20	AA02
08	1qn5_C_DA209_DG210	SYN	AB1S	88	0.06	AB1S
09	1qn5_C_DG210_DG211	NAN	NANT	0	0.65	BBS1
10	1qn5_C_DG211_DG212	BBB	BB00	90	0.13	BB00
11	1qn5_C_DG212_DC213	B12	BB04	86	0.19	BB04
12	1qn5_C_DC213_DA214	B12	BB04	29	0.35	BB04
13	1qn5_D_DT215_DG216	NAN	NANT	0	0.97	AB02
14	1qn5_D_DG216_DC217	NAN	NANT	0	0.74	BB10
15	1qn5_D_DC217_DC218	B-A	BA08	26	0.30	BA08
16	1qn5_D_DC218_DC219	B-A	BA05	44	0.28	BA05
17	1qn5_D_DC219_DT220	A-B	AB04	50	0.32	AB04
18	1qn5_D_DT220_DC221	B-A	BA01	34	0.36	BA01
19	1qn5_D_DC221_DT222	AAA	AA02	78	0.42	AA02
20	1qn5_D_DT222_DT223	AAA	AA02	78	0.44	AA02
21	1qn5_D_DT223_DA224	AAA	AA02	82	0.34	AA02
22	1qn5_D_DA224_DT225	AAA	AA02	76	0.30	AA02
23	1qn5_D_DT225_DA226	A-B	AB01	48	0.36	AB01
24	1qn5_D_DA226_DG227	BB2	BB07	48	0.34	BB07
25	1qn5_D_DG227_DC228	NAN	NANT	0	0.60	BA08
26	1qn5_E_DG201_DC202	NAN	NANT	0	0.57	AA03
27	1qn5_E_DC202_DT203	AAA	AA00	65	0.27	AA00
28	1qn5_E_DT203_DA204	A-B	AB04	88	0.14	AB04
29	1qn5_E_DA204_DT205	NAN	NANT	0	0.42	BA05
30	1qn5_E_DT205_DA206	AAA	AA02	87	0.20	AA02
31	1qn5_E_DA206_DA207	AAA	AA02	78	0.30	AA02
32	1qn5_E_DA207_DG208	AAA	AA02	85	0.25	AA02
33	1qn5_E_DG208_DA209	AAA	AA02	81	0.18	AA02
34	1qn5_E_DA209_DG210	SYN	AB1S	91	0.07	AB1S
35	1qn5_E_DG210_DG211	NAN	NANT	0	0.60	BBS1
36	1qn5_E_DG211_DG212	BBB	BB01	82	0.12	BB01
37	1qn5_E_DG212_DC213	BBw	BB02	22	0.35	BB02
38	1qn5_E_DC213_DA214	NAN	NANT	0	0.47	BB11
39	1qn5_F_DT215_DG216	NAN	NANT	0	0.74	AB02
40	1qn5_F_DG216_DC217	NAN	NANT	0	0.45	AB02
41	1qn5_F_DC217_DC218	B-A	BA08	81	0.26	BA08
42	1qn5_F_DC218_DC219	AAA	AA00	57	0.28	AA00
43	1qn5_F_DC219_DT220	A-B	AB04	22	0.34	AB04
44	1qn5_F_DT220_DC221	B-A	BA01	26	0.41	BA01
45	1qn5_F_DC221_DT222	AAA	AA02	77	0.45	AA02
46	1qn5_F_DT222_DT223	AAA	AA02	82	0.43	AA02
47	1qn5_F_DT223_DA224	AAA	AA02	83	0.33	AA02
48	1qn5_F_DA224_DT225	AAA	AA02	81	0.28	AA02
49	1qn5_F_DT225_DA226	A-B	AB01	48	0.37	AB01
50	1qn5_F_DA226_DG227	B12	BB04	69	0.28	BB04
51	1qn5_F_DG227_DC228	BBB	BB00	27	0.28	BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

δ1

ε1

ζ1

α2

β2

γ2

δ2

χ1

χ2

μ

NN

CC

step_torsions

ntC_average

Δ torsions

torsion scores

comments step confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

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Z

N

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