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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of the G(-26) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution.

Results of the assignment of 51 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011qn5_C_DC202_DT203AAAAA04460.33AA04
021qn5_C_DT203_DA204A-BAB04610.17AB04
031qn5_C_DA204_DT205NANNANT00.58BA08
041qn5_C_DT205_DA206AAAAA02850.20AA02
051qn5_C_DA206_DA207AAAAA02850.29AA02
061qn5_C_DA207_DG208AAAAA02840.23AA02
071qn5_C_DG208_DA209AAAAA02700.20AA02
081qn5_C_DA209_DG210SYNAB1S880.06AB1S
091qn5_C_DG210_DG211NANNANT00.65BBS1
101qn5_C_DG211_DG212BBBBB00900.13BB00
111qn5_C_DG212_DC213B12BB04860.19BB04
121qn5_C_DC213_DA214B12BB04290.35BB04
131qn5_D_DT215_DG216NANNANT00.97AB02
141qn5_D_DG216_DC217NANNANT00.74BB10
151qn5_D_DC217_DC218B-ABA08260.30BA08
161qn5_D_DC218_DC219B-ABA05440.28BA05
171qn5_D_DC219_DT220A-BAB04500.32AB04
181qn5_D_DT220_DC221B-ABA01340.36BA01
191qn5_D_DC221_DT222AAAAA02780.42AA02
201qn5_D_DT222_DT223AAAAA02780.44AA02
211qn5_D_DT223_DA224AAAAA02820.34AA02
221qn5_D_DA224_DT225AAAAA02760.30AA02
231qn5_D_DT225_DA226A-BAB01480.36AB01
241qn5_D_DA226_DG227BB2BB07480.34BB07
251qn5_D_DG227_DC228NANNANT00.60BA08
261qn5_E_DG201_DC202NANNANT00.57AA03
271qn5_E_DC202_DT203AAAAA00650.27AA00
281qn5_E_DT203_DA204A-BAB04880.14AB04
291qn5_E_DA204_DT205NANNANT00.42BA05
301qn5_E_DT205_DA206AAAAA02870.20AA02
311qn5_E_DA206_DA207AAAAA02780.30AA02
321qn5_E_DA207_DG208AAAAA02850.25AA02
331qn5_E_DG208_DA209AAAAA02810.18AA02
341qn5_E_DA209_DG210SYNAB1S910.07AB1S
351qn5_E_DG210_DG211NANNANT00.60BBS1
361qn5_E_DG211_DG212BBBBB01820.12BB01
371qn5_E_DG212_DC213BBwBB02220.35BB02
381qn5_E_DC213_DA214NANNANT00.47BB11
391qn5_F_DT215_DG216NANNANT00.74AB02
401qn5_F_DG216_DC217NANNANT00.45AB02
411qn5_F_DC217_DC218B-ABA08810.26BA08
421qn5_F_DC218_DC219AAAAA00570.28AA00
431qn5_F_DC219_DT220A-BAB04220.34AB04
441qn5_F_DT220_DC221B-ABA01260.41BA01
451qn5_F_DC221_DT222AAAAA02770.45AA02
461qn5_F_DT222_DT223AAAAA02820.43AA02
471qn5_F_DT223_DA224AAAAA02830.33AA02
481qn5_F_DA224_DT225AAAAA02810.28AA02
491qn5_F_DT225_DA226A-BAB01480.37AB01
501qn5_F_DA226_DG227B12BB04690.28BB04
511qn5_F_DG227_DC228BBBBB00270.28BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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