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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

One Sugar Pucker Fits All: Pairing Versatility Despite Conformational Uniformity in TNA

Results of the assignment of 14 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011pwf_A_DG1_DC2AAAAA00820.20AA00
021pwf_A_DC2_DG3AAwAA01950.03AA01
031pwf_A_DG3_DT4AAAAA00200.37AA00
041pwf_A_DT4_DA5AAwAA01830.20AA01
051pwf_A_DA5_2MU6AAAAA00890.18AA00
061pwf_A_DC8_DG9AAAAA00800.17AA00
071pwf_A_DG9_DC10AAAAA00810.20AA00
081pwf_B_DG111_DC112AAAAA00900.10AA00
091pwf_B_DC112_DG113AAAAA00800.22AA00
101pwf_B_DG113_DT114AAAAA00740.22AA00
111pwf_B_DT114_DA115AAAAA00900.15AA00
121pwf_B_DA115_2MU116AAAAA00920.18AA00
131pwf_B_DC118_DG119AAwAA01960.09AA01
141pwf_B_DG119_DC120AAAAA00670.27AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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