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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

STRUCTURE OF RIBONUCLEIC ACID, NMR, 1 STRUCTURE

Results of the assignment of 10 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011pbm_A_C1_G2AAAAA00740.18AA00
021pbm_A_G2_C3AAAAA00670.21AA00
031pbm_A_C3_G4AAAAA00710.20AA00
041pbm_A_G4_C5AAAAA00610.24AA00
051pbm_A_C5_G6AAAAA00560.25AA00
061pbm_B_C7_G8AAAAA00730.18AA00
071pbm_B_G8_C9AAAAA00630.23AA00
081pbm_B_C9_G10AAAAA00690.21AA00
091pbm_B_G10_C11AAAAA00570.25AA00
101pbm_B_C11_G12AAAAA00530.27AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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