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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Model for thiostrepton antibiotic binding to L11 substrate from 50S ribosomal RNA

Results of the assignment of 57 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011oln_C_G1051_C1052AAAAA00800.15AA00
021oln_C_C1052_U1053AAAAA00960.09AA00
031oln_C_U1053_G1054AAAAA00950.15AA00
041oln_C_G1054_G1055AAAAA00890.20AA00
051oln_C_G1055_G1056AAAAA00180.44AA00
061oln_C_G1056_A1057OPNOP01630.27OP01
071oln_C_A1057_U1058AAAAA00210.36AA00
081oln_C_U1058_G1059AAAAA00650.26AA00
091oln_C_G1059_U1060ZZZZZ01600.33ZZ01
101oln_C_U1060_U1061OPNOP18930.16OP18
111oln_C_U1061_G1062OPNOP13190.39OP13
121oln_C_G1062_G1063AAAAA00470.26AA00
131oln_C_G1063_C1064AAAAA00880.29AA00
141oln_C_C1064_U1065AAAAA00330.42AA00
151oln_C_U1065_U1066AAAAA00600.35AA00
161oln_C_U1066_A1067OPNOP04850.11OP04
171oln_C_A1067_G1068AAAAA00640.33AA00
181oln_C_G1068_A1069NANNANT00.43AB05
191oln_C_A1069_A1070NANNANT00.79OP19
201oln_C_A1070_G1071NANNANT01.18OP05
211oln_C_G1071_C1072AAAAA00720.25AA00
221oln_C_C1072_A1073NANNANT00.33OP30
231oln_C_A1073_G1074AAAAA00520.43AA00
241oln_C_G1074_C1075AAAAA00880.15AA00
251oln_C_C1075_C1076AAAAA00920.17AA00
261oln_C_C1076_A1077AAAAA00900.22AA00
271oln_C_A1077_U1078AAAAA00490.39AA00
281oln_C_U1078_C1079NANNANT01.56OP24
291oln_C_C1079_A1080AAAAA00680.28AA00
301oln_C_A1080_U1081AAAAA00580.28AA00
311oln_C_U1081_U1082AAAAA00750.26AA00
321oln_C_U1082_U1083AAwAA01620.33AA01
331oln_C_U1083_A1084OPNOP04750.14OP04
341oln_C_A1084_A1085AAAAA09800.17AA09
351oln_C_A1085_A1086NANNANT00.45AB2S
361oln_C_A1086_G1087NANNANT00.54OP28
371oln_C_G1087_A1088NANNANT00.93OP17
381oln_C_A1088_G1089NANNANT00.97OP15
391oln_C_G1089_U1090NANNANT00.81OP26
401oln_C_U1090_G1091AAAAA00820.19AA00
411oln_C_G1091_C1092AAAAA00840.27AA00
421oln_C_C1092_G1093AAAAA00220.52AA00
431oln_C_G1093_U1094AAAAA00360.37AA00
441oln_C_U1094_A1095OPNOP04780.17OP04
451oln_C_A1095_A1096AAAAA00580.34AA00
461oln_C_A1096_C1097AAwAA01550.25AA01
471oln_C_C1097_A1098NANNANT00.77AA08
481oln_C_A1098_G1099AAAAA08150.47AA08
491oln_C_G1099_C1100AAAAA00870.13AA00
501oln_C_C1100_U1101AAAAA00810.34AA00
511oln_C_U1101_C1102AAAAA00950.15AA00
521oln_C_C1102_A1103AAAAA00750.28AA00
531oln_C_A1103_C1104AAAAA08320.48AA08
541oln_C_C1104_C1105AAAAA00920.15AA00
551oln_C_C1105_A1106AAAAA00940.12AA00
561oln_C_A1106_G1107AAAAA00850.14AA00
571oln_C_G1107_C1108AAAAA00640.14AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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