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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Xenopus SMUG1, an anti-mutator uracil-DNA Glycosylase

Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011oe4_E_DC281_DC282BBBBB00130.33BB00
021oe4_E_DC282_DC283BBBBB00520.30BB00
031oe4_E_DC283_DG284BBBBB00760.30BB00
041oe4_E_DG284_DT285BBBBB01570.23BB01
051oe4_E_DT285_DG286BBBBB00590.26BB00
061oe4_E_DG286_DA287BB2BB07380.37BB07
071oe4_E_DA287_DG288B12BB04610.34BB04
081oe4_E_DG288_DT289B-ABA05630.19BA05
091oe4_E_DT289_DC290A-BAB01550.44AB01
101oe4_E_DC290_DC291NANNANT00.46BA10
111oe4_E_DC291_DG292NANNANT00.99OP21
121oe4_F_DC293_DG294NANNANT00.83OP20
131oe4_F_DG294_DG295BBBBB00730.28BB00
141oe4_F_DG295_DA296BBBBB00390.26BB00
151oe4_F_DA296_DC297BBBBB01880.20BB01
161oe4_F_DC297_DT298BBBBB00660.25BB00
171oe4_F_DA300_DC301BBBBB00640.32BB00
181oe4_F_DC301_DG302BB2BB07650.28BB07
191oe4_F_DG302_DG303BBBBB00870.28BB00
201oe4_F_DG303_DG304BBwBB17600.28BB17

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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