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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

CYTOSINE-CYTOSINE MISMATCH AT THE POLYMERASE ACTIVE SITE

Results of the assignment of 16 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011nk6_B_DG22_DC23BBBBB00840.20BB00
021nk6_B_DC23_DA24BBBBB00990.08BB00
031nk6_B_DA24_DT25B-ABA01930.16BA01
041nk6_B_DT25_DG26A-BAB01870.32AB01
051nk6_B_DG26_DA27B-ABA08860.23BA08
061nk6_B_DA27_DT28AAAAA00460.20AA00
071nk6_B_DT28_DC29AAwAA01350.19AA01
081nk6_B_DC29_DC30NANNANT01.14IC04
091nk6_C_DG4_DA5AAAAA00290.32AA00
101nk6_C_DA5_DT6AAAAA00850.19AA00
111nk6_C_DT6_DC7A-BAB01720.29AB01
121nk6_C_DC7_DA8BBBBB00910.21BB00
131nk6_C_DA8_DT9B-ABA01710.12BA01
141nk6_C_DT9_DG10A-BAB01900.11AB01
151nk6_C_DG10_DC11BBBBB00950.11BB00
161nk6_C_DC11_DA12BBBBB00790.21BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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