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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

STRUCTURE OF THE NUCLEAR FACTOR KAPPA-B (NF-KB) P50 HOMODIMER

Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011nfk_C_DT1_DG2NANNANT00.68IC06
021nfk_C_DG2_DG3BB2BB07460.21BB07
031nfk_C_DG3_DG4BBwBB02590.16BB02
041nfk_C_DG4_DA5BBBBB00720.28BB00
051nfk_C_DA5_DA6B12BB04660.22BB04
061nfk_C_DA6_DT7BBwBB02590.25BB02
071nfk_C_DT7_DT8BBwBB02410.30BB02
081nfk_C_DT8_DC9NANNANT00.30BB00
091nfk_C_DC9_DC10NANNANT00.34BB15
101nfk_C_DC10_DC11NANNANT00.44BB08
111nfk_D_DT1_DG2NANNANT00.47OP16
121nfk_D_DG2_DG3BBBBB00580.20BB00
131nfk_D_DG3_DG4miBBB15700.21BB15
141nfk_D_DG4_DA5BBBBB00560.37BB00
151nfk_D_DA5_DA6B12BB04490.23BB04
161nfk_D_DA6_DT7BBwBB02560.23BB02
171nfk_D_DT7_DT8BBwBB03930.23BB03
181nfk_D_DT8_DC9miBBB15770.27BB15
191nfk_D_DC9_DC10BBwBB02200.39BB02
201nfk_D_DC10_DC11NANNANT00.45BB15

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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