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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

lambda3 elongation complex with four phosphodiester bond formed

Results of the assignment of 11 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011n35_B_G1272_G1273AAAAA00850.19AA00
021n35_B_G1273_G1274AAAAA00490.33AA00
031n35_B_G1274_G1275AAwAA06850.20AA06
041n35_B_G1275_G1276NANNANT00.74AA06
051n35_C_U1283_A1284AAAAA00820.21AA00
061n35_C_A1284_G1285OPNOP06330.43OP06
071n35_C_G1285_C1286AAAAA00810.17AA00
081n35_C_C1286_C1287AAAAA00540.21AA00
091n35_C_C1287_C1288AAwAA01440.30AA01
101n35_C_C1288_C1289AAuAA12340.53AA12
111n35_C_C1289_C1290AAAAA00150.45AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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