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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of geneticin bound to the eubacterial 16S rRNA A site

Results of the assignment of 44 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011mwl_A_G2_C3AAAAA00770.13AA00
021mwl_A_C3_G4AAAAA00770.20AA00
031mwl_A_G4_U5AAwAA10380.37AA10
041mwl_A_U5_C6AAAAA08720.42AA08
051mwl_A_C6_A7AAAAA00860.24AA00
061mwl_A_A7_C8AAAAA00820.23AA00
071mwl_A_C8_A9AAAAA00820.11AA00
081mwl_A_A9_C10AAAAA00680.31AA00
091mwl_A_C10_C11AAAAA00600.31AA00
101mwl_A_C11_G12AAAAA00930.12AA00
111mwl_A_G12_G13AAAAA00930.22AA00
121mwl_A_G13_U14AAAAA00840.18AA00
131mwl_A_U14_G15AAAAA00560.24AA00
141mwl_A_G15_A.A16NANNANT01.30IC07
151mwl_A_G15_A.B16NANNANT01.57OP29
161mwl_A_A.A16_A.A17NANNANT00.42AA07
171mwl_A_A.B16_A.B17NANNANT00.49AB04
181mwl_A_A.A17_G.A18NANNANT01.54OP01
191mwl_A_A.B17_G.B18NANNANT00.71OP11
201mwl_A_G.A18_U19AAAAA00740.28AA00
211mwl_A_G.B18_U19AAAAA00410.39AA00
221mwl_A_U19_C20AAAAA00720.15AA00
231mwl_A_C20_G21AAAAA00890.19AA00
241mwl_A_G21_C22AAAAA00830.30AA00
251mwl_B_G24_C25AAAAA00690.17AA00
261mwl_B_C25_G26AAAAA00850.11AA00
271mwl_B_G26_U27NANNANT00.69BB02
281mwl_B_U27_C28AAwAA01440.39AA01
291mwl_B_C28_A29AAAAA00420.28AA00
301mwl_B_A29_C30AAAAA00530.26AA00
311mwl_B_C30_A31AAAAA00880.12AA00
321mwl_B_A31_C32AAAAA00850.16AA00
331mwl_B_C32_C33AAAAA00900.13AA00
341mwl_B_C33_G34AAAAA00900.15AA00
351mwl_B_G34_G35AAAAA00760.27AA00
361mwl_B_G35_U36AAAAA00710.26AA00
371mwl_B_U36_G37AAAAA00940.15AA00
381mwl_B_G37_A38NANNANT01.34IC07
391mwl_B_A38_A39AAAAA09630.23AA09
401mwl_B_A39_G40NANNANT00.83OP11
411mwl_B_G40_U41AAAAA00150.43AA00
421mwl_B_U41_C42AAAAA00780.11AA00
431mwl_B_C42_G43AAAAA00870.15AA00
441mwl_B_G43_C44AAAAA00750.23AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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