DNATCO v3.2: results

Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.

step number	Step name	CANA	NtC	confal	rmsd
01	1mwl_A_G2_C3	AAA	AA00	77	0.13	AA00
02	1mwl_A_C3_G4	AAA	AA00	77	0.20	AA00
03	1mwl_A_G4_U5	AAw	AA10	38	0.37	AA10
04	1mwl_A_U5_C6	AAA	AA08	72	0.42	AA08
05	1mwl_A_C6_A7	AAA	AA00	86	0.24	AA00
06	1mwl_A_A7_C8	AAA	AA00	82	0.23	AA00
07	1mwl_A_C8_A9	AAA	AA00	82	0.11	AA00
08	1mwl_A_A9_C10	AAA	AA00	68	0.31	AA00
09	1mwl_A_C10_C11	AAA	AA00	60	0.31	AA00
10	1mwl_A_C11_G12	AAA	AA00	93	0.12	AA00
11	1mwl_A_G12_G13	AAA	AA00	93	0.22	AA00
12	1mwl_A_G13_U14	AAA	AA00	84	0.18	AA00
13	1mwl_A_U14_G15	AAA	AA00	56	0.24	AA00
14	1mwl_A_G15_A.A16	NAN	NANT	0	1.30	IC07
15	1mwl_A_G15_A.B16	NAN	NANT	0	1.57	OP29
16	1mwl_A_A.A16_A.A17	NAN	NANT	0	0.42	AA07
17	1mwl_A_A.B16_A.B17	NAN	NANT	0	0.49	AB04
18	1mwl_A_A.A17_G.A18	NAN	NANT	0	1.54	OP01
19	1mwl_A_A.B17_G.B18	NAN	NANT	0	0.71	OP11
20	1mwl_A_G.A18_U19	AAA	AA00	74	0.28	AA00
21	1mwl_A_G.B18_U19	AAA	AA00	41	0.39	AA00
22	1mwl_A_U19_C20	AAA	AA00	72	0.15	AA00
23	1mwl_A_C20_G21	AAA	AA00	89	0.19	AA00
24	1mwl_A_G21_C22	AAA	AA00	83	0.30	AA00
25	1mwl_B_G24_C25	AAA	AA00	69	0.17	AA00
26	1mwl_B_C25_G26	AAA	AA00	85	0.11	AA00
27	1mwl_B_G26_U27	NAN	NANT	0	0.69	BB02
28	1mwl_B_U27_C28	AAw	AA01	44	0.39	AA01
29	1mwl_B_C28_A29	AAA	AA00	42	0.28	AA00
30	1mwl_B_A29_C30	AAA	AA00	53	0.26	AA00
31	1mwl_B_C30_A31	AAA	AA00	88	0.12	AA00
32	1mwl_B_A31_C32	AAA	AA00	85	0.16	AA00
33	1mwl_B_C32_C33	AAA	AA00	90	0.13	AA00
34	1mwl_B_C33_G34	AAA	AA00	90	0.15	AA00
35	1mwl_B_G34_G35	AAA	AA00	76	0.27	AA00
36	1mwl_B_G35_U36	AAA	AA00	71	0.26	AA00
37	1mwl_B_U36_G37	AAA	AA00	94	0.15	AA00
38	1mwl_B_G37_A38	NAN	NANT	0	1.34	IC07
39	1mwl_B_A38_A39	AAA	AA09	63	0.23	AA09
40	1mwl_B_A39_G40	NAN	NANT	0	0.83	OP11
41	1mwl_B_G40_U41	AAA	AA00	15	0.43	AA00
42	1mwl_B_U41_C42	AAA	AA00	78	0.11	AA00
43	1mwl_B_C42_G43	AAA	AA00	87	0.15	AA00
44	1mwl_B_G43_C44	AAA	AA00	75	0.23	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

δ1

ε1

ζ1

α2

β2

γ2

δ2

χ1

χ2

μ

NN

CC

step_torsions

ntC_average

Δ torsions

torsion scores

comments step confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Color by conformation group (pyramids)

Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

Color by NtC (balls)

A-B

B-A

B

IC

OPN

Z

N

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