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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

STRUCTURE OF RIBONUCLEIC ACID, NMR, MINIMIZED AVERAGE STRUCTURE

Results of the assignment of 14 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011mwg_A_G1_G2AAAAA00320.23AA00
021mwg_A_G2_C3AAAAA00200.25AA00
031mwg_A_C3_A4AAAAA00310.25AA00
041mwg_A_A4_G5AAAAA00280.34AA00
051mwg_A_G5_G6AAAAA00350.31AA00
061mwg_A_G6_C7AAAAA00630.18AA00
071mwg_A_C7_C8AAAAA00550.27AA00
081mwg_B_G9_G10AAAAA00270.22AA00
091mwg_B_G10_C11AAAAA00170.25AA00
101mwg_B_C11_A12AAAAA00280.25AA00
111mwg_B_A12_G13AAAAA00280.34AA00
121mwg_B_G13_G14AAAAA00350.32AA00
131mwg_B_G14_C15AAAAA00620.18AA00
141mwg_B_C15_C16AAAAA00570.25AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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