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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal Structure Analysis of a 26mer RNA molecule, representing a new RNA motif, the hook-turn

Results of the assignment of 24 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011mhk_S_C1_C2AAAAA00930.12AA00
021mhk_S_C2_A3AAAAA08890.15AA08
031mhk_S_A3_U4AAAAA00770.18AA00
041mhk_S_U4_G5AAwAA10570.38AA10
051mhk_S_G5_C6AAAAA08780.23AA08
061mhk_S_C6_G7AAAAA00220.46AA00
071mhk_S_G7_A8NANNANT00.63OP08
081mhk_S_A8_A9NANNANT01.25AA01
091mhk_S_A9_C10AAAAA08940.19AA08
101mhk_S_C10_C11AAAAA00460.33AA00
111mhk_S_C11_G12NANNANT00.80AB02
121mhk_L_C1_G2AAwAA01450.27AA01
131mhk_L_G2_A3AAwAA01600.23AA01
141mhk_L_A3_U4AAAAA08960.17AA08
151mhk_L_U4_C5AAAAA00950.12AA00
161mhk_L_C5_C6AAAAA00840.26AA00
171mhk_L_C6_U7AAuAA12800.15AA12
181mhk_L_U7_A8AAAAA00800.25AA00
191mhk_L_A8_G9AAwAA05870.21AA05
201mhk_L_G9_U10AAAAA08960.19AA08
211mhk_L_U10_G11AAuAA12720.25AA12
221mhk_L_G11_U12AAAAA00770.24AA00
231mhk_L_U12_G13AAwAA01680.25AA01
241mhk_L_G13_G14AAAAA08630.25AA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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