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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplex

Results of the assignment of 44 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011m5r_C_DG1_DA2NANNANT02.30OP28
021m5r_C_DA2_DT3BBBBB00800.24BB00
031m5r_C_DT3_DA4BBBBB00950.16BB00
041m5r_C_DA4_DC5BBBBB00920.14BB00
051m5r_C_DC5_DT6BBBBB00870.27BB00
061m5r_C_DA8_DG9BBBBB00720.25BB00
071m5r_C_DG9_DA10BBBBB00940.19BB00
081m5r_C_DA10_DT11BBBBB00960.15BB00
091m5r_C_DT11_DA12BBBBB00900.21BB00
101m5r_C_DA12_DG13BBBBB00830.10BB00
111m5r_E_DC14_DT15BBBBB00840.24BB00
121m5r_E_DT15_DA16BBBBB00890.17BB00
131m5r_E_DA16_DT17BBBBB00900.21BB00
141m5r_E_DT17_DC18BBBBB00870.23BB00
151m5r_E_DC18_DT19BBBBB00960.13BB00
161m5r_E_DT19_DG20BBBBB00850.21BB00
171m5r_E_DG20_DA21NANNANT00.50IC05
181m5r_E_DA21_DG22B12BB04930.21BB04
191m5r_E_DG22_DT23BBBBB00930.16BB00
201m5r_E_DT23_DA24BBBBB00830.23BB00
211m5r_E_DA24_DT25BBwBB02740.28BB02
221m5r_E_DT25_DC26NANNANT01.42OP16
231m5r_D_DG1_DA2BBBBB00920.18BB00
241m5r_D_DA2_DT3BBBBB00910.17BB00
251m5r_D_DT3_DA4BBBBB00910.21BB00
261m5r_D_DA4_DC5BBBBB00950.14BB00
271m5r_D_DC5_DT6BBBBB00920.20BB00
281m5r_D_DA8_DG9B12BB04910.14BB04
291m5r_D_DG9_DA10BBBBB00920.17BB00
301m5r_D_DA10_DT11BBBBB00980.13BB00
311m5r_D_DT11_DA12B12BB04850.20BB04
321m5r_D_DA12_DG13BBBBB00800.17BB00
331m5r_F_DC14_DT15BBBBB00860.23BB00
341m5r_F_DT15_DA16BBBBB00940.14BB00
351m5r_F_DA16_DT17BBBBB00930.16BB00
361m5r_F_DT17_DC18BBBBB00840.23BB00
371m5r_F_DC18_DT19BBBBB00860.20BB00
381m5r_F_DT19_DG20BBBBB00880.14BB00
391m5r_F_DG20_DA21NANNANT00.47IC05
401m5r_F_DA21_DG22B12BB04920.15BB04
411m5r_F_DG22_DT23BBBBB00900.21BB00
421m5r_F_DT23_DA24BBwBB02930.10BB02
431m5r_F_DA24_DT25miBBB13890.25BB13
441m5r_F_DT25_DC26BBwBB16690.24BB16

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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