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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

RNA APTAMER COMPLEXED WITH ARGININE, NMR

Results of the assignment of 23 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011koc_A_A5_G6AAAAA02550.30AA02
021koc_A_G6_A7NANNANT00.33AA02
031koc_A_A7_A8NANNANT01.04AB02
041koc_A_A8_G9NANNANT01.36BB03
051koc_A_G9_G10NANNANT00.86BB20
061koc_A_G10_A11NANNANT00.39AA04
071koc_A_A11_G12NANNANT00.45AB04
081koc_A_G12_C13NANNANT00.58BA10
091koc_A_C13_G14NANNANT00.50BB16
101koc_A_G14_U15AAAAA02210.34AA02
111koc_B_A27_C28NANNANT00.73IC06
121koc_B_C28_A29NANNANT00.69BB03
131koc_B_A29_G30NANNANT01.36ZZ2S
141koc_B_G30_G31NANNANT01.02BB11
151koc_B_G31_U32NANNANT01.23AA11
161koc_B_U32_A33NANNANT00.66OP12
171koc_B_A33_G34NANNANT00.73OP08
181koc_B_G34_G35NANNANT00.97BB20
191koc_B_G35_U36NANNANT00.67BBS1
201koc_B_U36_C37AAAAA00170.47AA00
211koc_B_C37_G38NANNANT00.49AB04
221koc_B_G38_C39B-ABA05630.29BA05
231koc_B_C39_U40AAAAA02190.40AA02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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