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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

MATALPHA2 HOMEODOMAIN BOUND TO DNA

Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011k61_E_DA1_DC2BBBBB00690.21BB00
021k61_E_DC2_DA3BBBBB00700.39BB00
031k61_E_DA3_DT4BBBBB00760.29BB00
041k61_E_DT4_DG5B12BB04770.19BB04
051k61_E_DG5_DT6BBBBB00730.32BB00
061k61_E_DT6_DA7NANNANT00.35BB2S
071k61_E_DA7_DA8SYNBBS1860.16BBS1
081k61_E_DA8_DT9B12BB04710.25BB04
091k61_E_DT9_DT10BBBBB00700.23BB00
101k61_E_DT10_DC11BB2BB07640.21BB07
111k61_E_DC11_DA12B12BB04860.24BB04
121k61_E_DA12_DT13BBBBB00850.21BB00
131k61_E_DT13_DT14B12BB04680.23BB04
141k61_E_DT14_DT15BBBBB00770.24BB00
151k61_E_DT15_DA16BBBBB00810.25BB00
161k61_E_DA16_DC17BBBBB00850.22BB00
171k61_E_DC17_DA18BBBBB00870.23BB00
181k61_E_DA18_DC19BBBBB00520.27BB00
191k61_E_DC19_DG20BBBBB00720.20BB00
201k61_E_DG20_DC21BBwBB02790.17BB02
211k61_F_5IU22_DG23BBBBB00560.32BB00
221k61_F_DG23_DC24BBBBB01790.22BB01
231k61_F_DC24_DG25BBBBB00620.38BB00
241k61_F_DG25_DT26BBBBB00910.15BB00
251k61_F_DT26_DG27BBBBB00790.22BB00
261k61_F_DG27_DT28BBwBB02440.31BB02
271k61_F_DT28_DA29BBBBB00730.26BB00
281k61_F_DA29_DA30BBBBB00910.09BB00
291k61_F_DA30_DA31BBBBB00950.11BB00
301k61_F_DA31_DT32BBBBB00930.19BB00
311k61_F_DT32_DG33BB2BB07940.19BB07
321k61_F_DG33_DA34BBBBB00910.17BB00
331k61_F_DA34_DA35BBBBB00860.18BB00
341k61_F_DA35_DT36BBwBB02770.15BB02
351k61_F_DT36_DT37BBBBB00640.32BB00
361k61_F_DT37_DA38BBBBB00760.23BB00
371k61_F_DA38_DC39BBBBB00920.20BB00
381k61_F_DC39_DA40BBBBB00330.38BB00
391k61_F_DA40_DT41BBBBB00460.30BB00
401k61_F_DT41_DG42BBBBB00670.37BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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