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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Structure of the Dimeric lac Repressor/Operator O1/ONPF Complex

Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011jwl_D_DT6_DG7NANNANT00.65BB11
021jwl_D_DG7_DT8BBwBB02310.38BB02
031jwl_D_DT8_DG9BBBBB00680.27BB00
041jwl_D_DG9_DA10BBBBB00590.41BB00
051jwl_D_DA10_DG11BBBBB00480.37BB00
061jwl_D_DG11_DC12BBwBB02170.45BB02
071jwl_D_DC12_DG13BBBBB00310.79BB00
081jwl_D_DG13_DG14BBwBB02360.40BB02
091jwl_D_DG14_DA15BBBBB00710.30BB00
101jwl_D_DA15_DT16NANNANT00.60BB02
111jwl_D_DT16_DA17BBBBB00430.48BB00
121jwl_D_DA17_DA18B12BB05360.31BB05
131jwl_D_DA18_DC19BBBBB00470.32BB00
141jwl_E_DG6_DT7miBBB1260.52BB12
151jwl_E_DT7_DT8NANNANT00.65BB15
161jwl_E_DT8_DA9B12BB04530.28BB04
171jwl_E_DA9_DT10NANNANT00.47BA05
181jwl_E_DT10_DC11NANNANT00.46BB07
191jwl_E_DC11_DC12NANNANT00.57BB00
201jwl_E_DC12_DG13BBBBB00480.65BB00
211jwl_E_DG13_DC14BBwBB02390.43BB02
221jwl_E_DC14_DT15BBBBB00630.32BB00
231jwl_E_DT15_DC16BBwBB02460.39BB02
241jwl_E_DC16_DA17BBBBB00700.32BB00
251jwl_E_DA17_DC18BBwBB02520.22BB02
261jwl_E_DC18_DA19BBBBB00140.54BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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