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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

PURINE REPRESSOR MUTANT-HYPOXANTHINE-PURF OPERATOR COMPLEX

Results of the assignment of 16 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011jft_B_DT699_DA700NANNANT00.73BA08
021jft_B_DA700_DC701NANNANT00.61AA04
031jft_B_DC701_DG702NANNANT00.41AB05
041jft_B_DG702_DC703miBBB15280.38BB15
051jft_B_DC703_DA704NANNANT00.44BB00
061jft_B_DA704_DA705BB2BB07230.40BB07
071jft_B_DA705_DA706BBBBB00230.25BB00
081jft_B_DA706_DC707NANNANT00.43AA02
091jft_B_DC707_DG708NANNANT00.72BB15
101jft_B_DG708_DT709NANNANT00.38BA10
111jft_B_DT709_DT710NANNANT00.61BB16
121jft_B_DT710_DT711BBBBB00530.26BB00
131jft_B_DT711_DG712NANNANT00.52BB10
141jft_B_DG712_DC713NANNANT00.41BB15
151jft_B_DC713_DG714NANNANT00.61BA16
161jft_B_DG714_DT715NANNANT00.71AB03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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