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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal Structure of the NC2-TBP-DNA Ternary Complex

Results of the assignment of 34 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011jfi_D_DT601_DT602BBBBB00800.21BB00
021jfi_D_DT602_DG603BBBBB00830.23BB00
031jfi_D_DG603_DG604B12BB04430.32BB04
041jfi_D_DG604_DC605BBBBB00390.35BB00
051jfi_D_DC605_DT606BBBBB01350.34BB01
061jfi_D_DT606_DA607NANNANT00.53BB00
071jfi_D_DA607_DT608NANNANT00.48BB15
081jfi_D_DT608_DA609BBBBB00130.46BB00
091jfi_D_DA609_DA610BBBBB00100.52BB00
101jfi_D_DA610_DA611BBBBB00210.65BB00
111jfi_D_DA611_DA612BBBBB00410.47BB00
121jfi_D_DA612_DG613NANNANT00.63BB11
131jfi_D_DG613_DG614BB2BB07490.38BB07
141jfi_D_DG614_DG615BBBBB00800.22BB00
151jfi_D_DG615_DC616BBwBB02690.22BB02
161jfi_D_DC616_DT617BBBBB00440.40BB00
171jfi_D_DT617_DC618BBwBB03260.35BB03
181jfi_E_DG702_DA703BBBBB00380.51BB00
191jfi_E_DA703_DG704BBBBB00740.32BB00
201jfi_E_DG704_DC705B12BB04750.30BB04
211jfi_E_DC705_DC706BBwBB02580.26BB02
221jfi_E_DC706_DC707BBBBB00860.24BB00
231jfi_E_DC707_DT708BBBBB00420.49BB00
241jfi_E_DT708_DT709BBBBB00710.32BB00
251jfi_E_DT709_DT710BBBBB00490.30BB00
261jfi_E_DT710_DT711BBBBB00370.51BB00
271jfi_E_DT711_DA712NANNANT00.73BB00
281jfi_E_DA712_DT713BBBBB00260.42BB00
291jfi_E_DT713_DA714BBBBB00460.35BB00
301jfi_E_DA714_DG715NANNANT00.57BB11
311jfi_E_DG715_DC716BBBBB00470.30BB00
321jfi_E_DC716_DC717BBBBB00760.20BB00
331jfi_E_DC717_DA718BBBBB00790.23BB00
341jfi_E_DA718_DA719NANNANT00.65OP20

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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