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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal Structure of the Ku heterodimer bound to DNA

Results of the assignment of 47 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011jey_C_DG1_DT2BBBBB00340.45BB00
021jey_C_DT2_DT3BBBBB00850.25BB00
031jey_C_DT3_DT4B12BB04590.27BB04
041jey_C_DT4_DT5BBBBB00640.29BB00
051jey_C_DT5_DT6B12BB04730.21BB04
061jey_C_DT6_DA7BB2BB07650.25BB07
071jey_C_DA7_DG8BBBBB00960.10BB00
081jey_C_DG8_DT9BBwBB02350.35BB02
091jey_C_DT9_DT10BBBBB00320.40BB00
101jey_C_DT10_DT11B12BB04470.36BB04
111jey_C_DT11_DA12BB2BB07440.24BB07
121jey_C_DA12_DT13miBBB10720.27BB10
131jey_C_DT13_DT14BBBBB00840.14BB00
141jey_C_DT14_DG15NANNANT00.68IC06
151jey_C_DG15_DG16BBBBB00690.33BB00
161jey_C_DG16_DG17B12BB04850.26BB04
171jey_C_DG17_DC18BBBBB00880.18BB00
181jey_D_DG4_DC5NANNANT00.63BB17
191jey_D_DC5_DC6B12BB04640.27BB04
201jey_D_DC6_DC7B12BB04540.23BB04
211jey_D_DC7_DA8NANNANT01.25BB17
221jey_D_DA8_DG9BBBBB00630.34BB00
231jey_D_DG9_DC10B12BB04710.23BB04
241jey_D_DC10_DT11B12BB04840.17BB04
251jey_D_DT11_DT12NANNANT00.70OP13
261jey_D_DT12_DT13NANNANT02.25OP10
271jey_D_DT13_DC14NANNANT01.17BB20
281jey_D_DC14_DC15NANNANT01.38OP16
291jey_D_DC15_DC16NANNANT01.89ZZ01
301jey_D_DC16_DA17NANNANT01.13BB00
311jey_D_DA17_DG18BBBBB00790.27BB00
321jey_D_DG18_DC19miBBB10700.27BB10
331jey_D_DC19_DT20NANNANT00.64BB10
341jey_D_DT20_DA21NANNANT01.12BB00
351jey_D_DA21_DA22BBBBB00710.31BB00
361jey_D_DA22_DT23BBBBB00700.29BB00
371jey_D_DT23_DA24B12BB04620.24BB04
381jey_D_DA24_DA25B12BB04840.18BB04
391jey_D_DA25_DA26BBwBB02720.14BB02
401jey_D_DA26_DC27BBBBB00680.31BB00
411jey_D_DC27_DT28BBBBB00570.30BB00
421jey_D_DT28_DA29BBBBB00900.14BB00
431jey_D_DA29_DA30B12BB04870.22BB04
441jey_D_DA30_DA31B12BB04870.13BB04
451jey_D_DA31_DA32BBBBB00780.24BB00
461jey_D_DA32_DA33B12BB04860.21BB04
471jey_D_DA33_DC34BBBBB00740.29BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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