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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

3D Solution NMR Structure of the M9I Mutant of the HMG-Box Domain of the Human Male Sex Determining Factor SRY Complexed to DNA

Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011j47_B_DC101_DC102BBBBB00910.16BB00
021j47_B_DC102_DT103BBBBB00920.17BB00
031j47_B_DT103_DG104BBBBB00870.19BB00
041j47_B_DG104_DC105BBBBB00870.25BB00
051j47_B_DC105_DA106BBBBB00860.20BB00
061j47_B_DA106_DC107BBBBB00900.20BB00
071j47_B_DC107_DA108B-ABA01120.37BA01
081j47_B_DA108_DA109A-BAB01500.27AB01
091j47_B_DA109_DA110BBBBB00670.42BB00
101j47_B_DA110_DC111BBBBB00630.37BB00
111j47_B_DC111_DA112BBBBB00720.46BB00
121j47_B_DA112_DC113BBBBB00900.15BB00
131j47_B_DC113_DC114BBBBB00780.26BB00
141j47_C_DG115_DG116BBBBB00930.19BB00
151j47_C_DG116_DT117BBBBB00900.15BB00
161j47_C_DT117_DG118BBBBB00880.32BB00
171j47_C_DG118_DT119B-ABA01370.26BA01
181j47_C_DT119_DT120AAAAA00790.34AA00
191j47_C_DT120_DT121A-BAB01640.18AB01
201j47_C_DT121_DG122BBBBB00900.23BB00
211j47_C_DG122_DT123BBBBB00870.18BB00
221j47_C_DT123_DG124BBBBB00890.18BB00
231j47_C_DG124_DC125BBBBB00910.20BB00
241j47_C_DC125_DA126BBBBB00930.18BB00
251j47_C_DA126_DG127BBBBB00950.15BB00
261j47_C_DG127_DG128BBBBB00970.14BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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