Click the Summary/Torsions/Similar/... tabs for more details.
Center view on step or molecule.
Show reference and contacts model altloc

Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

HOMING ENDONUCLEASE/DNA COMPLEX

Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011ipp_C_DT201_DT202BBwBB02790.21BB02
021ipp_C_DT202_DG203BBBBB00920.23BB00
031ipp_C_DG203_DA204BBBBB00820.20BB00
041ipp_C_DA204_DC205B-ABA10540.28BA10
051ipp_C_DC205_DT206AAAAA00860.22AA00
061ipp_C_DT206_DC207AAAAA00810.26AA00
071ipp_C_DC207_DT208A-BAB01580.21AB01
081ipp_C_DT208_DC209BBBBB00640.26BB00
091ipp_C_DC209_DT210BBBBB0090.52BB00
101ipp_C_DT210_DT211BBwBB02870.19BB02
111ipp_C_DT211_DA212NANNANT00.49BB11
121ipp_C_DA212_DA213B-ABA13510.41BA13
131ipp_C_DG214_DA215AAwAA01670.25AA01
141ipp_C_DA215_DG216AAAAA00680.17AA00
151ipp_C_DG216_DA217A-BAB05630.28AB05
161ipp_C_DA217_DG218BBBBB00510.34BB00
171ipp_C_DG218_DT219BBBBB00680.27BB00
181ipp_C_DT219_DC220NANNANT00.54BB02
191ipp_C_DC220_DA221NANNANT00.31BA05
201ipp_D_DT201_DT202BBBBB00590.26BB00
211ipp_D_DT202_DG203BBBBB00720.24BB00
221ipp_D_DG203_DA204BBBBB00880.21BB00
231ipp_D_DA204_DC205B-ABA10540.24BA10
241ipp_D_DC205_DT206AAAAA00840.19AA00
251ipp_D_DT206_DC207AAAAA00870.22AA00
261ipp_D_DC207_DT208A-BAB01670.29AB01
271ipp_D_DT208_DC209BBBBB00690.32BB00
281ipp_D_DC209_DT210BBBBB00340.47BB00
291ipp_D_DT210_DT211BBBBB00550.23BB00
301ipp_D_DT211_DA212NANNANT00.34BB11
311ipp_D_DA212_DA213B-ABA13500.47BA13
321ipp_D_DG214_DA215AAwAA01610.28AA01
331ipp_D_DA215_DG216A-BAB05890.23AB05
341ipp_D_DG216_DA217BBBBB00810.24BB00
351ipp_D_DA217_DG218BBBBB00440.40BB00
361ipp_D_DG218_DT219BBBBB00690.27BB00
371ipp_D_DT219_DC220BBBBB00530.22BB00
381ipp_D_DC220_DA221B12BB04710.26BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N