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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

1.3 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-[TRI(OXYETHYL)] THYMINE IN PLACE OF T6, MEDIUM NA-SALT

Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011i0q_A_DG1_DC2AAAAA00750.22AA00
021i0q_A_DC2_DG3AAwAA01940.05AA01
031i0q_A_DG3_DT4AAAAA00250.35AA00
041i0q_A_DT4_DA5AAwAA01860.24AA01
051i0q_A_DA5_1266AAAAA00960.10AA00
061i0q_A_1266_DA7AAAAA00940.10AA00
071i0q_A_DA7_DC8AAAAA00970.12AA00
081i0q_A_DC8_DG9AAAAA00920.15AA00
091i0q_A_DG9_DC10AAAAA00870.20AA00
101i0q_B_DG11_DC12AAAAA00700.28AA00
111i0q_B_DC12_DG13AAwAA01950.17AA01
121i0q_B_DG13_DT14AAAAA00780.20AA00
131i0q_B_DT14_DA15AAAAA00980.12AA00
141i0q_B_DA15_12616AAAAA00950.14AA00
151i0q_B_12616_DA17AAAAA00850.15AA00
161i0q_B_DA17_DC18AAAAA00910.19AA00
171i0q_B_DC18_DG19AAAAA00840.22AA00
181i0q_B_DG19_DC20AAAAA00650.24AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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