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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

1.6 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-AMINOOXYETHYL THYMINE IN PLACE OF T6, BA-FORM

Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011i0f_A_DG1_DC2AAAAA00650.24AA00
021i0f_A_DC2_DG3AAwAA01920.06AA01
031i0f_A_DG3_DT4AAAAA00250.36AA00
041i0f_A_DT4_DA5AAwAA01900.22AA01
051i0f_A_DA5_1276AAAAA00870.14AA00
061i0f_A_1276_DA7AAAAA00900.11AA00
071i0f_A_DA7_DC8AAAAA00950.13AA00
081i0f_A_DC8_DG9AAAAA00880.17AA00
091i0f_A_DG9_DC10AAAAA00780.23AA00
101i0f_B_DG11_DC12AAAAA00830.14AA00
111i0f_B_DC12_DG13AAAAA00890.18AA00
121i0f_B_DG13_DT14AAAAA00900.17AA00
131i0f_B_DT14_DA15AAAAA00910.13AA00
141i0f_B_DA15_12716AAAAA00850.16AA00
151i0f_B_12716_DA17AAAAA00820.14AA00
161i0f_B_DA17_DC18AAAAA00890.19AA00
171i0f_B_DC18_DG19AAAAA00730.23AA00
181i0f_B_DG19_DC20AAAAA00790.22AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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