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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

SOLUTION STRUCTURE OF RNA HAIRPIN LOOP UCAAUU AS PART OF HAIRPIN R(GCGUCAAUUCGCA)

Results of the assignment of 12 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011hs8_A_G1_C2AAAAA00820.20AA00
021hs8_A_C2_G3AAwAA01860.21AA01
031hs8_A_G3_U4AAAAA00620.39AA00
041hs8_A_U4_C5AAAAA00350.36AA00
051hs8_A_C5_A6OPNOP04130.36OP04
061hs8_A_A6_A7AAAAA00530.34AA00
071hs8_A_A7_U8NANNANT01.19OP17
081hs8_A_U8_U9NANNANT01.09OP26
091hs8_A_U9_C10AAAAA00570.25AA00
101hs8_A_C10_G11AAAAA00760.14AA00
111hs8_A_G11_C12AAAAA00760.18AA00
121hs8_A_C12_A13AAAAA00690.17AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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