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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

SOLUTION STRUCTURE OF RNA HAIRPIN LOOP UUAAUU AS PART OF HAIRPIN R(GCGUUAAUUCGCA)

Results of the assignment of 12 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011hs3_A_G1_C2AAAAA00800.19AA00
021hs3_A_C2_G3AAwAA01920.20AA01
031hs3_A_G3_U4AAAAA00620.37AA00
041hs3_A_U4_U5AAAAA00430.34AA00
051hs3_A_U5_A6OPNOP04190.39OP04
061hs3_A_A6_A7AAAAA00490.35AA00
071hs3_A_A7_U8NANNANT01.22OP17
081hs3_A_U8_U9NANNANT01.04OP26
091hs3_A_U9_C10AAAAA00570.27AA00
101hs3_A_C10_G11AAAAA00780.17AA00
111hs3_A_G11_C12AAAAA00800.17AA00
121hs3_A_C12_A13AAAAA00810.18AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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