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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

THE CRYSTAL STRUCTURE OF AN INTACT HUMAN MAX-DNA COMPLEX: NEW INSIGHTS INTO MECHANISMS OF TRANSCRIPTIONAL CONTROL

Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011hlo_C_DC102_DA103B-ABA13400.30BA13
021hlo_C_DA103_DC104A-BAB04210.41AB04
031hlo_C_DC104_DC105BBBBB01350.31BB01
041hlo_C_DC105_DA106BBBBB00500.41BB00
051hlo_C_DA106_DC107BBBBB01550.26BB01
061hlo_C_DC107_DG108BBBBB00350.36BB00
071hlo_C_DG108_DT109BBwBB02780.16BB02
081hlo_C_DT109_DG110BBBBB00720.15BB00
091hlo_C_DG110_DG111BBBBB00750.21BB00
101hlo_C_DG111_DT112NANNANT00.41BB13
111hlo_D_DA116_DC117miBBB15440.41BB15
121hlo_D_DC117_DC118BBBBB00860.16BB00
131hlo_D_DC118_DA119BBBBB00570.38BB00
141hlo_D_DA119_DC120BBBBB00120.31BB00
151hlo_D_DC120_DG121A-BAB03770.20AB03
161hlo_D_DG121_DT122BBwBB02910.08BB02
171hlo_D_DT122_DG123BBBBB00750.33BB00
181hlo_D_DG123_DG124BBBBB00670.28BB00
191hlo_D_DG124_DT125BBBBB00530.45BB00
201hlo_D_DT125_DG126BBBBB01560.28BB01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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