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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

FADR, FATTY ACID RESPONSIVE TRANSCRIPTION FACTOR FROM E. COLI IN COMPLEX WITH FADB OPERATOR

Results of the assignment of 36 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011h9t_X_DC1_DA2BBBBB00360.40BB00
021h9t_X_DA2_DT3BBBBB00480.36BB00
031h9t_X_DT3_DC4NANNANT00.40BB05
041h9t_X_DC4_DT5NANNANT00.47BB16
051h9t_X_DT5_DG6NANNANT00.40BB04
061h9t_X_DG6_DG7BBBBB00150.32BB00
071h9t_X_DG7_DT8BBwBB02510.22BB02
081h9t_X_DT8_DA9BBBBB00520.21BB00
091h9t_X_DA9_DC10NANNANT00.44BB02
101h9t_X_DC10_DG11BBBBB00650.40BB00
111h9t_X_DG11_DA12BBBBB00520.41BB00
121h9t_X_DA12_DC13BBBBB00840.33BB00
131h9t_X_DC13_DC14BBBBB00640.32BB00
141h9t_X_DC14_DA15BBBBB00630.24BB00
151h9t_X_DA15_DG16BBBBB00110.40BB00
161h9t_X_DG16_DA17BBBBB00440.26BB00
171h9t_X_DA17_DT18BBwBB02720.23BB02
181h9t_X_DT18_DC19BBBBB00660.23BB00
191h9t_Y_DG1_DA2BBBBB00700.32BB00
201h9t_Y_DA2_DT3BBBBB00550.30BB00
211h9t_Y_DT3_DC4NANNANT00.39BB05
221h9t_Y_DC4_DT5NANNANT00.48BB16
231h9t_Y_DT5_DG6B12BB04420.38BB04
241h9t_Y_DG6_DG7BBBBB00200.33BB00
251h9t_Y_DG7_DT8BBwBB02600.21BB02
261h9t_Y_DT8_DC9BBBBB01560.27BB01
271h9t_Y_DC9_DG10BBwBB02390.40BB02
281h9t_Y_DG10_DT11BBBBB00550.34BB00
291h9t_Y_DT11_DA12B12BB04840.19BB04
301h9t_Y_DA12_DC13BBBBB00720.33BB00
311h9t_Y_DC13_DC14BBBBB00790.27BB00
321h9t_Y_DC14_DA15BBBBB00530.25BB00
331h9t_Y_DA15_DG16B12BB04760.19BB04
341h9t_Y_DG16_DA17BBBBB00720.18BB00
351h9t_Y_DA17_DT18BBwBB02530.21BB02
361h9t_Y_DT18_DG19BBwBB11660.39BB11

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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