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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Structure of RecG bound to three-way DNA junction

Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011gm5_X_DC1_DA2NANNANT00.50BB00
021gm5_X_DA2_DG3miBBB15660.23BB15
031gm5_X_DG3_DC4BBwBB02230.30BB02
041gm5_X_DC4_DT5NANNANT00.34BB15
051gm5_X_DT5_DC6BBBBB00660.30BB00
061gm5_X_DC6_DC7BBBBB00540.20BB00
071gm5_X_DC7_DA8miBBB15650.32BB15
081gm5_X_DA8_DT9NANNANT00.38BB15
091gm5_X_DT9_DG10NANNANT00.30BB17
101gm5_X_DG10_DA11NANNANT01.51BB10
111gm5_X_DA11_DT12NANNANT00.71BB04
121gm5_Y_DG1_DC2NANNANT00.39BB00
131gm5_Y_DC2_DA3NANNANT00.37BB00
141gm5_Y_DA3_DG4NANNANT00.39BB17
151gm5_Y_DG4_DT5NANNANT00.56BB03
161gm5_Y_DT5_DG6BBBBB00410.42BB00
171gm5_Y_DG6_DC7NANNANT00.51BB02
181gm5_Y_DC7_DT8NANNANT00.45BB15
191gm5_Y_DT8_DC9NANNANT00.40BB01
201gm5_Y_DC9_DG10NANNANT00.39BB01
211gm5_Y_DG10_DC11NANNANT01.86IC07
221gm5_Y_DC11_DA12NANNANT00.42BBS1
231gm5_Y_DA12_DT13BBBBB00740.23BB00
241gm5_Y_DT13_DG14BBBBB00540.32BB00
251gm5_Y_DG14_DG15B12BB04420.20BB04
261gm5_Y_DG15_DA16BBBBB00160.34BB00
271gm5_Y_DA16_DG17NANNANT00.73BB13
281gm5_Y_DG17_DC18NANNANT00.43BB17
291gm5_Y_DC18_DT19BBBBB00830.27BB00
301gm5_Y_DT19_DG20NANNANT00.31BB00
311gm5_Z_DG1_DA2NANNANT00.50BB00
321gm5_Z_DA2_DG3BBwBB02460.39BB02
331gm5_Z_DG3_DC4BBBBB00460.33BB00
341gm5_Z_DC4_DA5BBwBB02170.37BB02
351gm5_Z_DA5_DC6NANNANT00.41BB01
361gm5_Z_DC6_DT7BBBBB00480.28BB00
371gm5_Z_DT7_DG8BBwBB02740.24BB02
381gm5_Z_DG8_DC9NANNANT00.37BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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