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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

NMR SOLUTION STRUCTURE OF A CHIMERIC OLIGONUCLEOTIDE HAIRPIN R(GGAC)D(TTCG)2'F-A(GTCC)

Results of the assignment of 55 detected steps in 5 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011fc8-m1_A_G1_G2AAAAA00810.17AA00
021fc8-m2_A_G1_G2AAAAA08680.28AA08
031fc8-m3_A_G1_G2AAAAA00800.20AA00
041fc8-m4_A_G1_G2AAAAA00840.19AA00
051fc8-m5_A_G1_G2AAAAA00810.20AA00
061fc8-m1_A_G2_A3AAAAA08820.17AA08
071fc8-m2_A_G2_A3AAAAA08820.19AA08
081fc8-m3_A_G2_A3AAAAA08670.27AA08
091fc8-m4_A_G2_A3AAAAA08690.25AA08
101fc8-m5_A_G2_A3AAAAA08780.24AA08
111fc8-m1_A_A3_C4AAAAA08750.20AA08
121fc8-m2_A_A3_C4AAAAA08670.20AA08
131fc8-m3_A_A3_C4AAAAA00690.24AA00
141fc8-m4_A_A3_C4AAAAA08570.28AA08
151fc8-m5_A_A3_C4AAAAA00640.34AA00
161fc8-m1_A_C4_DT5AAAAA00270.43AA00
171fc8-m2_A_C4_DT5AAAAA08220.33AA08
181fc8-m3_A_C4_DT5AAAAA00310.37AA00
191fc8-m4_A_C4_DT5AAAAA00320.38AA00
201fc8-m5_A_C4_DT5AAAAA00130.49AA00
211fc8-m1_A_DT5_DT6A-BAB01130.55AB01
221fc8-m2_A_DT5_DT6NANNANT01.35AB02
231fc8-m3_A_DT5_DT6A-BAB01250.42AB01
241fc8-m4_A_DT5_DT6NANNANT01.50OP29
251fc8-m5_A_DT5_DT6A-BAB01430.49AB01
261fc8-m1_A_DT6_DC7NANNANT00.71OP20
271fc8-m2_A_DT6_DC7NANNANT00.89ZZ02
281fc8-m3_A_DT6_DC7NANNANT00.63BB07
291fc8-m4_A_DT6_DC7NANNANT00.95ZZ02
301fc8-m5_A_DT6_DC7NANNANT00.98OP20
311fc8-m1_A_DC7_DG8NANNANT01.90IC04
321fc8-m2_A_DC7_DG8NANNANT00.50OP24
331fc8-m3_A_DC7_DG8NANNANT00.69OP24
341fc8-m4_A_DC7_DG8NANNANT00.92OP24
351fc8-m5_A_DC7_DG8NANNANT01.39IC04
361fc8-m1_A_DG8_GFL9NANNANT01.17BB10
371fc8-m2_A_DG8_GFL9NANNANT00.55OP15
381fc8-m3_A_DG8_GFL9NANNANT00.94OP15
391fc8-m4_A_DG8_GFL9NANNANT01.19BB10
401fc8-m5_A_DG8_GFL9NANNANT01.09BB10
411fc8-m1_A_GFL9_TAF10NANNANT00.57AA04
421fc8-m2_A_GFL9_TAF10NANNANT00.51AA04
431fc8-m3_A_GFL9_TAF10NANNANT00.63AA04
441fc8-m4_A_GFL9_TAF10NANNANT00.57AA04
451fc8-m5_A_GFL9_TAF10NANNANT00.69AA04
461fc8-m1_A_TAF10_CFL11NANNANT00.45AA04
471fc8-m2_A_TAF10_CFL11NANNANT00.45AA04
481fc8-m3_A_TAF10_CFL11NANNANT00.50BA08
491fc8-m4_A_TAF10_CFL11NANNANT00.45AA04
501fc8-m5_A_TAF10_CFL11NANNANT00.48BA08
511fc8-m1_A_CFL11_CFL12AAAAA02180.49AA02
521fc8-m2_A_CFL11_CFL12AAAAA02130.51AA02
531fc8-m3_A_CFL11_CFL12AAAAA02180.49AA02
541fc8-m4_A_CFL11_CFL12AAAAA02190.49AA02
551fc8-m5_A_CFL11_CFL12AAAAA02190.48AA02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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