Click the Summary/Torsions/Similar/... tabs for more details.
Center view on step or molecule.
Show reference and contacts model altloc

Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

CRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH 1,N6-ETHENOADENINE-DNA

Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011f4r_D_DG1_DA2BBwBB16450.63BB16
021f4r_D_DA2_DC3BBBBB00750.32BB00
031f4r_D_DC3_DA4B12BB04950.15BB04
041f4r_D_DA4_DT5BBBBB00940.18BB00
051f4r_D_DT5_DG6BB2BB07620.31BB07
061f4r_D_DG6_EDA7NANNANT00.48OP13
071f4r_D_EDA7_DT8NANNANT00.85OP20
081f4r_D_DT8_DT9BBBBB00780.19BB00
091f4r_D_DT9_DG10BBBBB00850.19BB00
101f4r_D_DG10_DC11B12BB04740.27BB04
111f4r_D_DC11_DC12BBBBB00580.34BB00
121f4r_E_DG15_DC16BBBBB00700.22BB00
131f4r_E_DC16_DA17B12BB04640.28BB04
141f4r_E_DA17_DA18BBBBB00940.17BB00
151f4r_E_DA18_DT19NANNANT00.58BB00
161f4r_E_DT19_DC20NANNANT00.43BB04
171f4r_E_DC20_DA21BB2BB07850.31BB07
181f4r_E_DA21_DT22BBBBB00900.16BB00
191f4r_E_DT22_DG23BBBBB00880.21BB00
201f4r_E_DG23_DT24BBwBB02870.15BB02
211f4r_E_DT24_DC25BBBBB00810.23BB00
221f4r_E_DC25_DA26BBBBB00820.22BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N