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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

CRYSTAL STRUCTURE OF A BIOTIN-BINDING RNA PSEUDOKNOT

Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011f27_A_A3_C4AAAAA00720.23AA00
021f27_A_C4_C5AAAAA00870.15AA00
031f27_A_C5_G6AAAAA00940.12AA00
041f27_A_G6_U7A-BAB05830.00AB05
051f27_A_U7_C8NANNANT00.88OP14
061f27_A_C8_A9NANNANT01.31BB08
071f27_A_A9_G10NANNANT00.97OP12
081f27_A_G10_A11AAAAA00340.18AA00
091f27_A_A11_G12AAAAA00730.19AA00
101f27_A_G12_G13AAAAA00470.31AA00
111f27_A_G13_A14AAAAA00650.25AA00
121f27_A_A14_C15AAAAA00770.19AA00
131f27_A_C15_A16AAAAA08800.28AA08
141f27_A_A16_C17AAAAA00730.19AA00
151f27_A_C17_G18AAAAA00830.18AA00
161f27_A_G18_G19AAAAA00870.23AA00
171f27_A_G19_U20AAAAA00780.20AA00
181f27_A_U20_U21AAAAA00870.18AA00
191f27_B_A22_A23NANNANT00.36OP17
201f27_B_A23_A24OPNOP06250.46OP06
211f27_B_A24_A25AAAAA00900.11AA00
221f27_B_A25_A26AAAAA00830.26AA00
231f27_B_A26_G27ICLIC01180.42IC01
241f27_B_G27_U28B-ABA16430.20BA16
251f27_B_U28_C29AAAAA00930.15AA00
261f27_B_C29_C30AAAAA00870.19AA00
271f27_B_C30_U31AAAAA00960.13AA00
281f27_B_U31_C32AAAAA00880.20AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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