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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

REV RESPONSE ELEMENT (RRE) RNA COMPLEXED WITH REV PEPTIDE, NMR, MINIMIZED AVERAGE STRUCTURE

Results of the assignment of 33 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011etf_A_G41_G42AAAAA00570.29AA00
021etf_A_G42_U43AAAAA00710.25AA00
031etf_A_U43_C44AAAAA00670.22AA00
041etf_A_C44_U45AAAAA00680.29AA00
051etf_A_U45_G46A-BAB01460.35AB01
061etf_A_G46_G47NANNANT00.50BA17
071etf_A_G47_G48A-BAB01340.32AB01
081etf_A_G48_C49NANNANT00.58BA08
091etf_A_C49_G50AAAAA00660.28AA00
101etf_A_G50_C51AAAAA00680.26AA00
111etf_A_C51_A52AAAAA00700.30AA00
121etf_A_A52_G53AAAAA00720.21AA00
131etf_A_G53_C54AAAAA00560.27AA00
141etf_A_C54_G55AAAAA00580.30AA00
151etf_A_G55_C56NANNANT01.25OP09
161etf_A_C56_A57NANNANT00.97OP12
171etf_A_A57_A58AAAAA00330.38AA00
181etf_A_A58_G64NANNANT00.66AA04
191etf_A_G64_C65AAwAA01590.31AA01
201etf_A_C65_U66AAAAA00750.25AA00
211etf_A_U66_G67AAAAA00340.32AA00
221etf_A_G67_A68NANNANT01.30OP17
231etf_A_A68_C69NANNANT02.21OP16
241etf_A_C69_G70AAAAA00770.25AA00
251etf_A_G70_G71NANNANT00.52ZZ01
261etf_A_G71_U72NANNANT00.60OP21
271etf_A_U72_A73OPNOP11520.33OP11
281etf_A_A73_C74AAAAA00360.37AA00
291etf_A_C74_A75AAAAA00750.27AA00
301etf_A_A75_G76AAAAA00710.24AA00
311etf_A_G76_G77AAAAA00610.28AA00
321etf_A_G77_C78AAAAA00680.22AA00
331etf_A_C78_C79AAAAA00590.26AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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