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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

ECORV BOUND TO MN2+ AND COGNATE DNA CONTAINING A 3'S SUBSTITION AT THE CLEAVAGE SITE

Results of the assignment of 14 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011eo4_C_DA2_DA3BBBBB00880.15BB00
021eo4_C_DA3_DG4BBBBB00790.18BB00
031eo4_C_DG4_DA5NANNANT00.33BB08
041eo4_C_DA7_DT8BBwBB02650.23BB02
051eo4_C_DT8_DC9BBBBB00690.21BB00
061eo4_C_DC9_DT10BBBBB00690.30BB00
071eo4_C_DT10_DT11BBBBB00840.25BB00
081eo4_D_DC1_DA2B-ABA01230.42BA01
091eo4_D_DA2_DA3NANNANT00.37AB02
101eo4_D_DA3_DG4NANNANT00.49BA05
111eo4_D_DG4_DA5NANNANT00.41AA01
121eo4_D_DA7_DT8AAwAA01180.28AA01
131eo4_D_DT8_DC9AAAAA00410.42AA00
141eo4_D_DC9_DT10AAAAA00310.32AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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