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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

CRYSTAL STRUCTURE OF TRIMERIC CRE RECOMBINASE-LOX COMPLEX

Results of the assignment of 33 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011drg_B_DT1_DA2NANNANT00.76BB03
021drg_B_DA2_DT3NANNANT00.46BA05
031drg_B_DT3_DA4A-BAB03680.39AB03
041drg_B_DA4_DA5BBBBB00560.32BB00
051drg_B_DA5_DC6B-ABA09640.22BA09
061drg_B_DC6_DT7A-BAB05650.27AB05
071drg_B_DT7_DT8BBBBB00770.12BB00
081drg_B_DT8_DC9BBwBB02690.14BB02
091drg_B_DC9_DG10B12BB04450.34BB04
101drg_B_DG10_DT11B12BB04880.16BB04
111drg_B_DT11_DA12BBBBB01670.17BB01
121drg_B_DA12_DT13BBBBB00820.25BB00
131drg_B_DT13_DA14B12BB04560.25BB04
141drg_B_DA14_DG15BBBBB00300.21BB00
151drg_B_DG15_DC16NANNANT00.52BA05
161drg_C_DA1_DT2A-BAB05570.25AB05
171drg_C_DT2_DA3NANNANT01.03OP20
181drg_C_DA3_DT4BBBBB00320.28BB00
191drg_C_DT4_DG5BBBBB00360.37BB00
201drg_C_DG5_DC6BBBBB00670.19BB00
211drg_C_DC6_DT7BBBBB00350.20BB00
221drg_C_DT7_DA8B-ABA01200.24BA01
231drg_C_DA8_DT9A-BAB01320.30AB01
241drg_C_DT9_DA10NANNANT00.52BB00
251drg_C_DA10_DC11BBBBB00520.29BB00
261drg_C_DC11_DG12BB2BB07790.19BB07
271drg_C_DG12_DA13BBBBB00420.15BB00
281drg_C_DA13_DA14miBBB10320.29BB10
291drg_C_DA14_DG15B12BB04570.28BB04
301drg_C_DG15_DT16NANNANT00.40BB00
311drg_C_DT16_DT17NANNANT00.54BB02
321drg_C_DT17_DA18NANNANT00.41BB10
331drg_C_DA18_DT19miBBB13360.44BB13

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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