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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

THE X-RAY STRUCTURE OF THE DNASE I-D(GGTATACC)2 COMPLEX AT 2.3 ANGSTROMS RESOLUTION

Results of the assignment of 13 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011dnk_B_DG301_DG302AAAAA04850.24AA04
021dnk_B_DG302_DT303AAAAA08280.17AA08
031dnk_B_DT303_DA304AAAAA00660.30AA00
041dnk_B_DA304_DT305AAAAA04280.38AA04
051dnk_B_DT305_DA306NANNANT00.60BB16
061dnk_B_DA306_DC307BBBBB00380.42BB00
071dnk_C_DG309_DG310NANNANT00.71BB07
081dnk_C_DG310_DT311BBBBB00540.21BB00
091dnk_C_DT311_DA312BBBBB00770.23BB00
101dnk_C_DA312_DT313B-ABA09200.30BA09
111dnk_C_DT313_DA314NANNANT00.32AB04
121dnk_C_DA314_DC315NANNANT00.52BA09
131dnk_C_DC315_DC316A-BAB04490.26AB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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