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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

DNA RECOGNITION BY GAL4: STRUCTURE OF A PROTEIN/DNA COMPLEX

Results of the assignment of 36 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011d66_D_DC1_DC2BBBBB00160.44BB00
021d66_D_DC2_DG3BB2BB07280.35BB07
031d66_D_DG3_DG4BBBBB00550.32BB00
041d66_D_DG4_DA5BB2BB07680.28BB07
051d66_D_DA5_DG6NANNANT00.33BB10
061d66_D_DG6_DG7B12BB04350.38BB04
071d66_D_DG7_DA8BB2BB07710.19BB07
081d66_D_DA8_DC9BBBBB00600.19BB00
091d66_D_DC9_DA10B12BB04680.24BB04
101d66_D_DA10_DG11B12BB04480.42BB04
111d66_D_DG11_DT12BBBBB00160.57BB00
121d66_D_DT12_DC13NANNANT00.72BA08
131d66_D_DC13_DC14B12BB04260.44BB04
141d66_D_DC14_DT15NANNANT00.36BB10
151d66_D_DT15_DC16B12BB04770.38BB04
161d66_D_DC16_DC17BB2BB07750.32BB07
171d66_D_DC17_DG18BBBBB00200.46BB00
181d66_D_DG18_DG19BB2BB07750.25BB07
191d66_E_DC20_DC21NANNANT00.42BB03
201d66_E_DC21_DG22NANNANT00.55BB10
211d66_E_DG22_DG23BBBBB00300.38BB00
221d66_E_DG23_DA24BB2BB07210.29BB07
231d66_E_DA24_DG25NANNANT00.65BB16
241d66_E_DG25_DG26BBBBB0090.41BB00
251d66_E_DG26_DA27B12BB04610.31BB04
261d66_E_DA27_DC28NANNANT00.65BB2S
271d66_E_DC28_DT29NANNANT00.58BBS1
281d66_E_DT29_DG30BBBBB00380.32BB00
291d66_E_DG30_DT31NANNANT00.58BB15
301d66_E_DT31_DC32BBBBB00150.40BB00
311d66_E_DC32_DC33B12BB04560.33BB04
321d66_E_DC33_DT34miBBB10590.40BB10
331d66_E_DT34_DC35B12BB04300.37BB04
341d66_E_DC35_DC36BB2BB07550.40BB07
351d66_E_DC36_DG37NANNANT00.45BB10
361d66_E_DG37_DG38B12BB04300.29BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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