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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

INTRON ENCODED HOMING ENDONUCLEASE I-PPOI (H98A)/DNA HOMING SITE COMPLEX

Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011cyq_C_DT401_DT402BBwBB02880.15BB02
021cyq_C_DT402_DG403BBBBB00940.22BB00
031cyq_C_DG403_DA404BBBBB00940.18BB00
041cyq_C_DA404_DC405B-ABA10660.23BA10
051cyq_C_DC405_DT406AAAAA00790.23AA00
061cyq_C_DT406_DC407AAAAA00880.21AA00
071cyq_C_DC407_DT408A-BAB01850.26AB01
081cyq_C_DT408_DC409BBBBB00600.29BB00
091cyq_C_DC409_DT410BBBBB00170.48BB00
101cyq_C_DT410_DT411BBwBB02780.23BB02
111cyq_C_DT411_DA412BBBBB00740.41BB00
121cyq_C_DA412_DA413B-ABA16890.23BA16
131cyq_C_DA413_DG414AAwAA01940.15AA01
141cyq_C_DG414_DA415AAwAA01520.27AA01
151cyq_C_DA415_DG416AAAAA00650.22AA00
161cyq_C_DG416_DA417A-BAB01590.47AB01
171cyq_C_DA417_DG418BBBBB00620.35BB00
181cyq_C_DG418_DT419BBBBB00690.27BB00
191cyq_C_DT419_DC420NANNANT00.43BB02
201cyq_C_DC420_DA421B-ABA01150.37BA01
211cyq_D_DT501_DT502BBBBB00780.19BB00
221cyq_D_DT502_DG503BBBBB00840.22BB00
231cyq_D_DG503_DA504BBBBB00940.15BB00
241cyq_D_DA504_DC505B-ABA10720.22BA10
251cyq_D_DC505_DT506AAAAA00820.21AA00
261cyq_D_DT506_DC507AAAAA00850.23AA00
271cyq_D_DC507_DT508A-BAB01780.32AB01
281cyq_D_DT508_DC509BBBBB00620.30BB00
291cyq_D_DC509_DT510BBBBB00320.45BB00
301cyq_D_DT510_DT511B-ABA01600.26BA01
311cyq_D_DT511_DA512A-BAB01610.34AB01
321cyq_D_DA512_DA513B-ABA16890.21BA16
331cyq_D_DA513_DG514AAwAA01930.17AA01
341cyq_D_DG514_DA515AAwAA01490.28AA01
351cyq_D_DA515_DG516A-BAB05760.27AB05
361cyq_D_DG516_DA517BBBBB00810.20BB00
371cyq_D_DA517_DG518BBBBB00540.38BB00
381cyq_D_DG518_DT519BBBBB00780.27BB00
391cyq_D_DT519_DC520BBBBB00890.19BB00
401cyq_D_DC520_DA521B12BB04760.23BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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