Conformers:
ABBIImiBZICOPNSYNN
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A PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAPTTCGCG) COMPLEX WITH DNA BASE ANALOG PURINE (P)
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 12 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1cl8_B_DT1_DC2 | NAN | NANT | 0 | 0.77 |
| 02 | 1cl8_B_DC2_DG3 | B-A | BA05 | 45 | 0.21 |
| 03 | 1cl8_B_DG3_DC4 | BBB | BB01 | 18 | 0.42 |
| 04 | 1cl8_B_DC4_DG5 | BBB | BB00 | 85 | 0.16 |
| 05 | 1cl8_B_DG5_DA6 | BBB | BB00 | 68 | 0.32 |
| 06 | 1cl8_B_DA6_PRN7 | BBB | BB00 | 47 | 0.61 |
| 07 | 1cl8_B_PRN7_DT8 | NAN | NANT | 0 | 0.56 |
| 08 | 1cl8_B_DT8_DT9 | A-B | AB01 | 39 | 0.29 |
| 09 | 1cl8_B_DT9_DC10 | BBB | BB00 | 82 | 0.25 |
| 10 | 1cl8_B_DC10_DG11 | B12 | BB04 | 65 | 0.26 |
| 11 | 1cl8_B_DG11_DC12 | BBB | BB01 | 68 | 0.23 |
| 12 | 1cl8_B_DC12_DG13 | BBw | BB11 | 30 | 0.31 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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