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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

HUMAN TBP CORE DOMAIN COMPLEXED WITH DNA

Results of the assignment of 30 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011cdw_B_DC1_DT2A-BAB05890.14AB05
021cdw_B_DT2_DG3BBBBB00430.34BB00
031cdw_B_DG3_DC4B-ABA10790.29BA10
041cdw_B_DC4_DT5AAAAA00870.24AA00
051cdw_B_DT5_DA6A-BAB04750.22AB04
061cdw_B_DA6_DT7NANNANT00.64BA08
071cdw_B_DT7_DA8AAAAA02900.23AA02
081cdw_B_DA8_DA9AAAAA02860.22AA02
091cdw_B_DA9_DA10AAAAA02890.26AA02
101cdw_B_DA10_DA11AAAAA02910.07AA02
111cdw_B_DA11_DG12NANNANT00.56AB03
121cdw_B_DG12_DG13B12BB04730.16BB04
131cdw_B_DG13_DC14B-ABA08820.41BA08
141cdw_B_DC14_DT15A-BAB01530.28AB01
151cdw_B_DT15_DG16BBBBB00780.20BB00
161cdw_C_DC101_DA102A-BAB05910.22AB05
171cdw_C_DA102_DG103BBBBB00690.28BB00
181cdw_C_DG103_DC104BBBBB00480.33BB00
191cdw_C_DC104_DC105B-ABA05210.21BA05
201cdw_C_DC105_DT106NANNANT00.52AA02
211cdw_C_DT106_DT107AAAAA02260.53AA02
221cdw_C_DT107_DT108AAAAA02930.38AA02
231cdw_C_DT108_DT109AAAAA02840.41AA02
241cdw_C_DT109_DA110AAAAA02760.36AA02
251cdw_C_DA110_DT111AAAAA02830.34AA02
261cdw_C_DT111_DA112A-BAB01570.34AB01
271cdw_C_DA112_DG113B-ABA16910.19BA16
281cdw_C_DG113_DC114AAAAA00650.18AA00
291cdw_C_DC114_DA115A-BAB01530.24AB01
301cdw_C_DA115_DG116BBwBB02550.26BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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