Results of the assignment of 30 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
| step number | Step name | CANA | NtC | confal | rmsd | |
|---|---|---|---|---|---|---|
| 01 | 1cdw_B_DC1_DT2 | A-B | AB05 | 89 | 0.14 | AB05 |
| 02 | 1cdw_B_DT2_DG3 | BBB | BB00 | 43 | 0.34 | BB00 |
| 03 | 1cdw_B_DG3_DC4 | B-A | BA10 | 79 | 0.29 | BA10 |
| 04 | 1cdw_B_DC4_DT5 | AAA | AA00 | 87 | 0.24 | AA00 |
| 05 | 1cdw_B_DT5_DA6 | A-B | AB04 | 75 | 0.22 | AB04 |
| 06 | 1cdw_B_DA6_DT7 | NAN | NANT | 0 | 0.64 | BA08 |
| 07 | 1cdw_B_DT7_DA8 | AAA | AA02 | 90 | 0.23 | AA02 |
| 08 | 1cdw_B_DA8_DA9 | AAA | AA02 | 86 | 0.22 | AA02 |
| 09 | 1cdw_B_DA9_DA10 | AAA | AA02 | 89 | 0.26 | AA02 |
| 10 | 1cdw_B_DA10_DA11 | AAA | AA02 | 91 | 0.07 | AA02 |
| 11 | 1cdw_B_DA11_DG12 | NAN | NANT | 0 | 0.56 | AB03 |
| 12 | 1cdw_B_DG12_DG13 | B12 | BB04 | 73 | 0.16 | BB04 |
| 13 | 1cdw_B_DG13_DC14 | B-A | BA08 | 82 | 0.41 | BA08 |
| 14 | 1cdw_B_DC14_DT15 | A-B | AB01 | 53 | 0.28 | AB01 |
| 15 | 1cdw_B_DT15_DG16 | BBB | BB00 | 78 | 0.20 | BB00 |
| 16 | 1cdw_C_DC101_DA102 | A-B | AB05 | 91 | 0.22 | AB05 |
| 17 | 1cdw_C_DA102_DG103 | BBB | BB00 | 69 | 0.28 | BB00 |
| 18 | 1cdw_C_DG103_DC104 | BBB | BB00 | 48 | 0.33 | BB00 |
| 19 | 1cdw_C_DC104_DC105 | B-A | BA05 | 21 | 0.21 | BA05 |
| 20 | 1cdw_C_DC105_DT106 | NAN | NANT | 0 | 0.52 | AA02 |
| 21 | 1cdw_C_DT106_DT107 | AAA | AA02 | 26 | 0.53 | AA02 |
| 22 | 1cdw_C_DT107_DT108 | AAA | AA02 | 93 | 0.38 | AA02 |
| 23 | 1cdw_C_DT108_DT109 | AAA | AA02 | 84 | 0.41 | AA02 |
| 24 | 1cdw_C_DT109_DA110 | AAA | AA02 | 76 | 0.36 | AA02 |
| 25 | 1cdw_C_DA110_DT111 | AAA | AA02 | 83 | 0.34 | AA02 |
| 26 | 1cdw_C_DT111_DA112 | A-B | AB01 | 57 | 0.34 | AB01 |
| 27 | 1cdw_C_DA112_DG113 | B-A | BA16 | 91 | 0.19 | BA16 |
| 28 | 1cdw_C_DG113_DC114 | AAA | AA00 | 65 | 0.18 | AA00 |
| 29 | 1cdw_C_DC114_DA115 | A-B | AB01 | 53 | 0.24 | AB01 |
| 30 | 1cdw_C_DA115_DG116 | BBw | BB02 | 55 | 0.26 | BB02 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Download
Results as csv or json file.Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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