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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

ECORV-T93A/DNA/CA2+

Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011bss_C_DA901_DA902NANNANT00.57BBS1
021bss_C_DA902_DA903B12BB04570.20BB04
031bss_C_DA903_DG904BBBBB00770.14BB00
041bss_C_DG904_DA905B-ABA16150.21BA16
051bss_C_DA905_DT906NANNANT00.41AB04
061bss_C_DT906_DA907NANNANT00.66BB16
071bss_C_DA907_DT908BBBBB00920.20BB00
081bss_C_DT908_DC909B12BB04120.32BB04
091bss_C_DC909_DT910NANNANT00.55BB02
101bss_C_DT910_DT911B12BB04280.44BB04
111bss_D_DA801_DA802NANNANT00.64BBS1
121bss_D_DA802_DA803BBBBB00810.20BB00
131bss_D_DA803_DG804B12BB04660.29BB04
141bss_D_DG804_DA805B-ABA16110.26BA16
151bss_D_DA805_DT806NANNANT00.39AB04
161bss_D_DT806_DA807NANNANT00.44BB02
171bss_D_DA807_DT808BBBBB00820.24BB00
181bss_D_DT808_DC809BBBBB00580.23BB00
191bss_D_DC809_DT810BBBBB00590.33BB00
201bss_D_DT810_DT811B12BB04400.34BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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